View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1469_low_55 (Length: 215)

Name: NF1469_low_55
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1469_low_55
NF1469_low_55
[»] chr8 (4 HSPs)
chr8 (1-210)||(12200300-12200509)
chr8 (1-210)||(12444728-12444937)
chr8 (8-156)||(12195300-12195448)
chr8 (8-156)||(12439728-12439876)
[»] chr4 (20 HSPs)
chr4 (1-58)||(50669048-50669105)
chr4 (8-58)||(7908325-7908375)
chr4 (6-59)||(7237753-7237806)
chr4 (6-58)||(7877727-7877779)
chr4 (6-49)||(7771396-7771439)
chr4 (6-49)||(7790081-7790124)
chr4 (1-59)||(7813470-7813528)
chr4 (1-59)||(7822959-7823017)
chr4 (1-50)||(37827024-37827073)
chr4 (6-58)||(7773848-7773900)
chr4 (1-58)||(7765608-7765665)
chr4 (1-58)||(7786430-7786487)
chr4 (1-58)||(48852659-48852716)
chr4 (1-50)||(50250820-50250869)
chr4 (3-59)||(7800629-7800685)
chr4 (1-57)||(49048605-49048661)
chr4 (5-50)||(48147756-48147801)
chr4 (1-50)||(48170601-48170650)
chr4 (5-58)||(48898701-48898754)
chr4 (82-154)||(49048508-49048580)
[»] chr7 (1 HSPs)
chr7 (1-50)||(48883794-48883843)
[»] chr6 (1 HSPs)
chr6 (1-49)||(21979678-21979726)
[»] chr3 (2 HSPs)
chr3 (1-48)||(11005994-11006041)
chr3 (1-48)||(11024569-11024616)
[»] chr1 (2 HSPs)
chr1 (5-52)||(24310168-24310215)
chr1 (5-50)||(24367144-24367189)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 12200300 - 12200509
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccctttgtccatcctttatgaaaacttcatcaaagttggaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  12200300 tctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccctttgtccagccttggtgaaaacttcatcaaagttggaattt 12200399  T
Q  101 ttctcattgagagataaaaagtggaatgaaattgaaggtcctcacatcacttattttaataccagggatagtcccaaaccttccaaagcaggattattct 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||    
T  12200400 ttctcattgagagataacaagtggaatgaaattgaaggtcctcacatcacttcttttaataccagggatcatcccaaaccttccaaagcaggattattct 12200499  T
Q  201 ttaatggggt 210  Q
    ||||||||||    
T  12200500 ttaatggggt 12200509  T

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Target: chr8; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 12444728 - 12444937
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccctttgtccatcctttatgaaaacttcatcaaagttggaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  12444728 tctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccctttgtccagccttggtgaaaacttcatcaaagttggaattt 12444827  T
Q  101 ttctcattgagagataaaaagtggaatgaaattgaaggtcctcacatcacttattttaataccagggatagtcccaaaccttccaaagcaggattattct 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||    
T  12444828 ttctcattgagagataacaagtggaatgaaattgaaggtcctcacatcacttcttttaataccagggatcatcccaaaccttccaaagcaggattattct 12444927  T
Q  201 ttaatggggt 210  Q
    ||||||||||    
T  12444928 ttaatggggt 12444937  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 12195300 - 12195448
Alignment:
Q  8 ggttttggttatgaccggtcaagagatgattacttggtggttttattgtccctttgtccatcctttatgaaaacttcatcaaagttggaatttttctcat 107  Q
    ||||||||||||||| | | |||||||||||||||||| ||||||||||||  |  |||| ||||  |||||||||||||  | || |||||||||||||    
T  12195300 ggttttggttatgacggattaagagatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcat 12195399  T
Q  108 tgagagataaaaagtggaatgaaattgaaggtcctcacatcacttattt 156  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12195400 tgagagataataagtggaatgaaattgaaggtcctcacatcacttattt 12195448  T

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Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 12439728 - 12439876
Alignment:
Q  8 ggttttggttatgaccggtcaagagatgattacttggtggttttattgtccctttgtccatcctttatgaaaacttcatcaaagttggaatttttctcat 107  Q
    ||||||||||||||| | | |||||||||||||||||| ||||||||||||  |  |||| ||||  |||||||||||||  | || |||||||||||||    
T  12439728 ggttttggttatgacggattaagagatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcat 12439827  T
Q  108 tgagagataaaaagtggaatgaaattgaaggtcctcacatcacttattt 156  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12439828 tgagagataataagtggaatgaaattgaaggtcctcacatcacttattt 12439876  T

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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 50669048 - 50669105
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  50669048 tctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcc 50669105  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 7908325 - 7908375
Alignment:
Q  8 ggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 58  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcc 7908375  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 7237806 - 7237753
Alignment:
Q  6 atggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 59  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggttgtattttccc 7237753  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 7877727 - 7877779
Alignment:
Q  6 atggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 58  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttcattgtcc 7877779  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 7771396 - 7771439
Alignment:
Q  6 atggttttggttatgaccggtcaagagatgattacttggtggtt 49  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggtt 7771439  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 7790081 - 7790124
Alignment:
Q  6 atggttttggttatgaccggtcaagagatgattacttggtggtt 49  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggtt 7790124  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7813470 - 7813528
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 59  Q
    ||||||||||||||||||||||| |||||||||||||||| || ||||| |||| ||||    
T  7813470 tctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttccc 7813528  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7822959 - 7823017
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 59  Q
    ||||||||||||||||||||||| |||||||||||||||| || ||||| |||| ||||    
T  7822959 tctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttccc 7823017  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37827073 - 37827024
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttt 50  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  37827073 tctatatggttttggttatgaccagtctagagatgattacttggttgttt 37827024  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 7773900 - 7773848
Alignment:
Q  6 atggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 58  Q
    |||||||||||||||||| |  |||||||||||||||||||||| ||||||||    
T  7773900 atggttttggttatgaccaggtaagagatgattacttggtggttgtattgtcc 7773848  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7765608 - 7765665
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 58  Q
    |||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  7765608 tctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 7765665  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7786430 - 7786487
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 58  Q
    |||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  7786430 tctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 7786487  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 48852659 - 48852716
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 58  Q
    ||||||||||||||| ||||||| |||||  |||||||||||||| |||||| |||||    
T  48852659 tctatatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcc 48852716  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 50250869 - 50250820
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttt 50  Q
    |||||||||||||||||||||||  |||| ||||||||| ||||||||||    
T  50250869 tctatatggttttggttatgaccactcaacagatgattatttggtggttt 50250820  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 7800629 - 7800685
Alignment:
Q  3 tatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 59  Q
    ||||||||||||||||||||| |||||||||||| ||| || ||||| |||| ||||    
T  7800629 tatatggttttggttatgaccagtcaagagatgagtacgtgctggttgtattttccc 7800685  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 49048661 - 49048605
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtc 57  Q
    ||||||||||||||| |||||||  |||| ||||||||| ||||||||| |||||||    
T  49048661 tctatatggttttgggtatgacccatcaacagatgattatttggtggttgtattgtc 49048605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 48147801 - 48147756
Alignment:
Q  5 tatggttttggttatgaccggtcaagagatgattacttggtggttt 50  Q
    ||||||||||| ||||||| || || ||||||||||||||||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggttt 48147756  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 48170650 - 48170601
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttt 50  Q
    ||||||||||||||| ||||| | || ||||||||||||||| |||||||    
T  48170650 tctatatggttttgggtatgatcagttaagagatgattacttagtggttt 48170601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 48898701 - 48898754
Alignment:
Q  5 tatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 58  Q
    ||||||||||| ||||| | || || |||||||||||| |||||||||||||||    
T  48898701 tatggttttgggtatgatcagttaacagatgattacttagtggttttattgtcc 48898754  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 49048580 - 49048508
Alignment:
Q  82 ttcatcaaagttggaatttttctcattgagagataaaaagtggaatgaaattgaaggtcctcacatcacttat 154  Q
    ||||||| | ||||| |||||||| ||||||||||| |  ||||| |||||||| ||| |||||||| |||||    
T  49048580 ttcatcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcacatcccttat 49048508  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48883794 - 48883843
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggttt 50  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  48883794 tctatatggttttggttatgacccgtcaagagatgattacatggtggttt 48883843  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21979726 - 21979678
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggtt 49  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  21979726 tctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11006041 - 11005994
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 48  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  11006041 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 11005994  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11024616 - 11024569
Alignment:
Q  1 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 48  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  11024616 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 11024569  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 24310168 - 24310215
Alignment:
Q  5 tatggttttggttatgaccggtcaagagatgattacttggtggtttta 52  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattacttggtagtttta 24310215  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 24367144 - 24367189
Alignment:
Q  5 tatggttttggttatgaccggtcaagagatgattacttggtggttt 50  Q
    ||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggttt 24367189  T

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