View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_7 (Length: 450)
Name: NF1469_low_7
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 13411619 - 13412031
Alignment:
| Q |
1 |
gatgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13411619 |
gatgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagat |
13411718 |
T |
|
| Q |
101 |
gttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaatttcaataagtaataagtataagtaatttatctacatttgagatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13411719 |
gttaaatatcgatttgtgattgacattagaaacactcttaaaacaagcccttaaatttcaataagtaataagtataagtaa-ttatctacatttgagatc |
13411817 |
T |
|
| Q |
201 |
tttccaaataaacatttgcaaagtttttacttgtaatatttctattgtaatatgattgttattgacggttgaaattatctataagaataagattatgaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||| |
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| T |
13411818 |
tttccaaataaacatttgcaaagtttttacttgtaatatttctattgtaatatgattgctattgttggttgaaattatctaca--------------aga |
13411903 |
T |
|
| Q |
301 |
tcagggatccatt-aattttagtatatctcttattaaacatattttagattttcttctgcgctatattcaagtgttaaaccatgatga---gtggggatt |
396 |
Q |
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|||| ||||||| | |||| |||||| | ||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||| ||||| ||| |
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| T |
13411904 |
tcagaaatccattgatttttggtatatattttattaaacatattttagattttgttctgcgttatattcaagtgtt-acccatgatgagacgtgggcatt |
13412002 |
T |
|
| Q |
397 |
acaaattaaaagatcaaataaaaataagg |
425 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
13412003 |
acaaattaaaagatcaaataaaaataagg |
13412031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 13386108 - 13386265
Alignment:
| Q |
1 |
gatgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagat |
100 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| ||||||| |||||||| | ||| |||||||||| ||||||||||| ||||| ||| |||| ||||| |
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| T |
13386108 |
gatgcttgaatttgctgctaaacacaatgtaaaacctgacattgaagttgttcctgtggattatgttaacacagcaattgagcgactcctcaaagcagat |
13386207 |
T |
|
| Q |
101 |
gttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaattt |
158 |
Q |
| |
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|| ||||||||||||||| | ||||||||||||||||| ||| |||| ||||||||| |
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| T |
13386208 |
gtcaaatatcgatttgtgctcgacattggaaacactctgaaaccaagttcttaaattt |
13386265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 13418847 - 13418698
Alignment:
| Q |
6 |
ttgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaa |
105 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||| || | ||||| ||||||||||||||||||||||||||| || | ||| |||||||||| |
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|
| T |
13418847 |
ttgattttgcagcagaacacaatgtaacgcctgatattgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgataaagcagatgttaa |
13418748 |
T |
|
| Q |
106 |
atatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaa |
155 |
Q |
| |
|
||||||||| |||||||| |||||||| || || ||| |||||||||||| |
|
|
| T |
13418747 |
atatcgattcgtgattgatattggaaatacgctgaaaccaagcccttaaa |
13418698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 13425725 - 13425572
Alignment:
| Q |
2 |
atgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagatg |
101 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||||||| || | ||||| ||||||||||||||||||||||||||| || | ||| |||||| |
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| T |
13425725 |
atgattgattttgcggccgaacacaatgtaacacctgatattgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaagcagatg |
13425626 |
T |
|
| Q |
102 |
ttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaa |
155 |
Q |
| |
|
| ||||||||||| || ||||| |||||||| || || ||| |||||||||||| |
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|
| T |
13425625 |
tgaaatatcgattcgttattgatattggaaatacactaaaaccaagcccttaaa |
13425572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 13394357 - 13394491
Alignment:
| Q |
2 |
atgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagatg |
101 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| || || ||||||||||| |||||||||| |||||||||||| |||| ||| |||| |||||| |
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|
| T |
13394357 |
atgattgattttgctgctaaacacaatataaaaccagacatcgaagtcataccagtggattatgttaacacagcaatgaagcgactcctcaaagcagatg |
13394456 |
T |
|
| Q |
102 |
ttaaatatcgatttgtgattgacattggaaacact |
136 |
Q |
| |
|
| ||||||||||||||| | || || ||||||||| |
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|
| T |
13394457 |
tcaaatatcgatttgtgctcgatatcggaaacact |
13394491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 13453248 - 13453115
Alignment:
| Q |
2 |
atgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagatg |
101 |
Q |
| |
|
|||||||||||||| || ||||||||||| | ||||||||||| |||| ||||| ||||||||||||||||| |||||||| | | ||| |||||| |
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|
| T |
13453248 |
atgattgattttgcggcggaacacaatgtaaagcctgatattgagatcattcctattgattatgtcaacacagcgatggagcgccttcttaaagcagatg |
13453149 |
T |
|
| Q |
102 |
ttaaatatcgatttgtgattgacattggaaacac |
135 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| |
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|
| T |
13453148 |
tgaaatatcgatttgtgattgatattggaaacac |
13453115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 13389896 - 13390053
Alignment:
| Q |
1 |
gatgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagat |
100 |
Q |
| |
|
|||| |||| |||||||||||||||| ||| ||||||| ||||||||| | ||| |||||||||| ||||||||||| ||||| ||| |||| ||||| |
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|
| T |
13389896 |
gatgcttgactttgctgctaaacacagcgtaaaacctgacattgaagtcgttcctgtggattatgttaacacagcaattgagcgactcctcaaagcagat |
13389995 |
T |
|
| Q |
101 |
gttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaattt |
158 |
Q |
| |
|
|| ||||||||||||||| | || || ||||||||| | ||| |||| ||||||||| |
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|
| T |
13389996 |
gtcaaatatcgatttgtgctcgatatcggaaacactttgaaaccaagttcttaaattt |
13390053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 13446431 - 13446278
Alignment:
| Q |
2 |
atgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagatg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| || | ||||| |||||||||||||| |||||||||||| | ||| ||||| |
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|
| T |
13446431 |
atgattgattttgctgctaaacacaatgtaacgcctgagattgaggttgttcctattgattatgtcaacaccgcaatggagcgtcttgttaaaggagatg |
13446332 |
T |
|
| Q |
102 |
ttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaa |
155 |
Q |
| |
|
| ||||||||||| |||||||| |||||||| | || ||| |||||||||||| |
|
|
| T |
13446331 |
tcaaatatcgattcgtgattgatattggaaattcactaaaaccaagcccttaaa |
13446278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 13372641 - 13372508
Alignment:
| Q |
2 |
atgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagatg |
101 |
Q |
| |
|
|||||||||||||| || ||||| |||| ||||||||||||| || || || || |||||||| || | |||||||| ||| | | |||| | |||| |
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|
| T |
13372641 |
atgattgattttgcagccaaacatgatgtgaaacctgatattgaggttattccaatagattatgtgaatagtgcaatggatcgtctactcaaagctgatg |
13372542 |
T |
|
| Q |
102 |
ttaaatatcgatttgtgattgacattggaaacac |
135 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
13372541 |
tgaaatatcgctttgttattgacattggaaacac |
13372508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 148
Target Start/End: Complemental strand, 13412473 - 13412327
Alignment:
| Q |
2 |
atgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagatg |
101 |
Q |
| |
|
|||||| ||||||| || ||||||||||| | || ||||| || || | || || ||||||||||||||||||||| ||||| | || ||| | |
|
|
| T |
13412473 |
atgattaattttgcggcagaacacaatgtaaagccggatatcgaggttgttccgattgattatgtcaacacagcaatgcagcgtcttgctaagggagacg |
13412374 |
T |
|
| Q |
102 |
ttaaatatcgatttgtgattgacattggaaacactcttaaaacaagc |
148 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| || ||| ||||| |
|
|
| T |
13412373 |
tgaaatatcgatttgtgattgatattggaaacacactgaaaccaagc |
13412327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 13378283 - 13378246
Alignment:
| Q |
98 |
gatgttaaatatcgatttgtgattgacattggaaacac |
135 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
13378283 |
gatgtgaaatatcgatttgttattgacattggaaacac |
13378246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 47600606 - 47600455
Alignment:
| Q |
6 |
ttgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||| |||| ||||||| || |
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|
| T |
47600606 |
ttgattttgctgctaaacacaatgtaaaacctaccattgaagtcatccctatggattatgttaacactgcaatggagcgactcctcaaagcagatgtcaa |
47600507 |
T |
|
| Q |
106 |
atatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaatt |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
47600506 |
atatcgatttgtgattgacattggaaacactctcaaaccaagctcttaaatt |
47600455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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