View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1470-Insertion-1 (Length: 1080)

Name: NF1470-Insertion-1
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1470-Insertion-1
NF1470-Insertion-1
[»] chr3 (3 HSPs)
chr3 (8-742)||(52582216-52582961)
chr3 (826-960)||(52581999-52582135)
chr3 (360-437)||(52590698-52590775)
[»] chr8 (6 HSPs)
chr8 (826-951)||(15552364-15552490)
chr8 (852-951)||(17915137-17915237)
chr8 (826-936)||(21356098-21356208)
chr8 (842-951)||(31498486-31498599)
chr8 (866-951)||(1236155-1236241)
chr8 (359-426)||(33462834-33462901)
[»] chr7 (1 HSPs)
chr7 (852-951)||(28164813-28164913)
[»] chr1 (3 HSPs)
chr1 (852-951)||(39487537-39487637)
chr1 (360-440)||(7301660-7301740)
chr1 (866-939)||(931843-931917)
[»] chr2 (2 HSPs)
chr2 (837-951)||(32742109-32742224)
chr2 (826-951)||(37904593-37904718)
[»] chr6 (1 HSPs)
chr6 (852-953)||(647798-647899)
[»] chr4 (1 HSPs)
chr4 (360-422)||(6084577-6084639)
[»] chr5 (3 HSPs)
chr5 (836-910)||(10023827-10023902)
chr5 (866-932)||(36836834-36836900)
chr5 (826-936)||(14043215-14043326)


Alignment Details
Target: chr3 (Bit Score: 600; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 8 - 742
Target Start/End: Complemental strand, 52582961 - 52582216
Alignment:
Q  8 tgatttttgcagctatcctaatgattctgagaagttgatcctggcttcccaaacaggtttaaccaaaaaccaagtaattccttatccaaaaactacccct 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52582961 tgatttttgcagctatcctaatgattctgagaagttaatcctggcttcccaaacaggtttaaccaaaaaccaagtaattccttatccaaaaactacccct 52582862  T
Q  108 ttccnnnnnnnctaatgatatgttaatttagcctcttaagcatttattatagtagtagagactaaggcgacaaatttctttcactttttcttttatgggt 207  Q
    ||||       |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52582861 ttcctttttttctaat---atgttaatttagcctcttaagcatttattatagtagtagagactaaggcgacaaatttctttcactttttcttttatgggt 52582765  T
Q  208 aggaatcgagttagggtctcaaatttacaacaatcacatatagtgcacgtcgataaattccgacaaaataaaacacttcaaacattaacttgagtgnnnn 307  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |        
T  52582764 aggaatcaagttagggtctcaaatttacaacaatcacatacagtgcacgtcgataaattccgacaaaataaaacacttcaaacattaacttgagggtttt 52582665  T
Q  308 nnnnnn------caaagttatttatgatggtcatgttgttgatgtatggagtgttggttcaggtgtcaaactggttcattaatgcaagggtacggctatg 401  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52582664 tttttttttttccaaagttatttatgatggtcatgttgttgatgtatggagtgttggttcaggtgtcaaactggttcattaatgcaagggtacggctatg 52582565  T
Q  402 gaaaccaatgatagaagaaatgtacaaagaagagtttggagactcttcggaagactccaacccaccagctaacaattttatgtcaagggaagatgtcact 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||    
T  52582564 gaaaccaatgatagaagaaatgtacaaagaagagtttggagactcttcggaagactccaacccgccagctaacaattttatgtcaagggaagatagcact 52582465  T
Q  502 gtggaggattaggacttagaagtgaat--------ctatgaagatagaaagaattttgtttgagaaatttcaaaatcaggagagaatattattatgtaac 593  Q
    |||||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52582464 gtggaggattaggacttagaagtgaattatataacctatgaagataaaaagaattttgtttgagaaatttcaaaatcaggagagaatattattatgtaac 52582365  T
Q  594 atgacaaaatgatccaatgtgtcttcaggtgaatttacagtttttgaaattcatgacttatgatgctctttagattagtaaccagacatcattcgttttg 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52582364 atgacaaaatgatccaatgtgtcttcaggtgaatttacagtttttgaaattcatgacttatgatgctctttagattagtaaccagacatcattcgttttg 52582265  T
Q  694 acatttcctcgtagccatgtcagattgatatttatatactactccctcc 742  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52582264 acatttcctcgtagccatgtcagattgatatttatatactactccctcc 52582216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 826 - 960
Target Start/End: Complemental strand, 52582135 - 52581999
Alignment:
Q  826 taaatgcaataatttcaagttcaccttcattaaactcacctcattaatgtttttactaccgcaagataagggtaaaattaa-aaaatatcactttttaat 924  Q
    ||||||||||||||| ||||||| ||| || ||||||| ||||||||||| |||||||| | |||||||| |||||||||| ||||||| ||||||| ||    
T  52582135 taaatgcaataattttaagttcatctttatcaaactcatctcattaatgtctttactactgtaagataagagtaaaattaaaaaaatataacttttt-at 52582037  T
Q  925 aatgacttaaatgt-gtcaattcacttt-ttaatatat 960  Q
    |||||||||||| | ||||||||||||| |||||||||    
T  52582036 aatgacttaaatatggtcaattcactttcttaatatat 52581999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 360 - 437
Target Start/End: Complemental strand, 52590775 - 52590698
Alignment:
Q  360 tcaggtgtcaaactggttcattaatgcaagggtacggctatggaaaccaatgatagaagaaatgtacaaagaagagtt 437  Q
    ||||||| |||| ||||||||||||||| | || || || |||||||||||| | |||||||| ||||||||||||||    
T  52590775 tcaggtggcaaattggttcattaatgcacgtgtgcgtctttggaaaccaatggttgaagaaatatacaaagaagagtt 52590698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 5e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 826 - 951
Target Start/End: Original strand, 15552364 - 15552490
Alignment:
Q  826 taaatgcaataatttcaagttcaccttcattaaactcacctcattaatgtttttactaccgcaagataagggtaaaatta-aaaaatatcactttttaat 924  Q
    ||||||||| |||| |||||| ||| ||||||||| |||||||||||||| ||||||||  ||||| ||||||||||||| |||||||||||||||| |     
T  15552364 taaatgcaacaattccaagtttaccctcattaaacccacctcattaatgtctttactacttcaagacaagggtaaaattagaaaaatatcacttttt-ac 15552462  T
Q  925 aatgacttaaatgt-gtcaattcacttt 951  Q
    |||||||||||||| |||||| ||||||    
T  15552463 aatgacttaaatgtggtcaatccacttt 15552490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 852 - 951
Target Start/End: Original strand, 17915137 - 17915237
Alignment:
Q  852 tcattaaactcacctcattaatgtttttactaccgcaagataagggtaaaatta-aaaaatatcactttttaataatgacttaaatgt-gtcaattcact 949  Q
    ||||||||| ||||||||| |||| ||||||||  ||||| |||||||||| || ||||||||||||||||| ||||||||||||||| |||||| ||||    
T  17915137 tcattaaacccacctcattgatgtatttactactccaagacaagggtaaaactagaaaaatatcacttttta-taatgacttaaatgtggtcaatccact 17915235  T
Q  950 tt 951  Q
    ||    
T  17915236 tt 17915237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 826 - 936
Target Start/End: Original strand, 21356098 - 21356208
Alignment:
Q  826 taaatgcaataatttcaagttcaccttcattaaactcacctcattaatgtttttactaccgcaagataagggtaaaatta-aaaaatatcactttttaat 924  Q
    ||||||| | |||||||| || ||| ||||||||||||||||| |||||| ||||||||  ||||| ||||||||| ||| |||||| |||| |||| ||    
T  21356098 taaatgccacaatttcaaatttaccctcattaaactcacctcaataatgtctttactactccaagacaagggtaaatttagaaaaatttcacatttt-at 21356196  T
Q  925 aatgacttaaat 936  Q
    ||||||||||||    
T  21356197 aatgacttaaat 21356208  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 842 - 951
Target Start/End: Complemental strand, 31498599 - 31498486
Alignment:
Q  842 aagttcaccttcattaaactcacct---cattaatgtttttactaccgcaagataagggtaaaatt-aaaaaatatcactttttaataatgacttaaatg 937  Q
    ||||| ||| ||||||||||||| |   ||||||||| ||||||||  ||| | |||||||||||| ||||||||||||||||| |||||||||||||||    
T  31498599 aagtttaccctcattaaactcactttatcattaatgtctttactactccaaaaaaagggtaaaattgaaaaaatatcacttttt-ataatgacttaaatg 31498501  T
Q  938 t-gtcaattcacttt 951  Q
    | |||||| ||||||    
T  31498500 tggtcaatccacttt 31498486  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 866 - 951
Target Start/End: Complemental strand, 1236241 - 1236155
Alignment:
Q  866 tcattaatgtttttactaccgcaagataagggtaaaatt-aaaaaatatcactttttaataatgacttaaatgt-gtcaattcacttt 951  Q
    ||||||| || ||||||||  ||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||||    
T  1236241 tcattaaggtctttactactccaagacaagggtaaaattgaaaaaatatcacttttt-ataatgacttaaatgtggtcaatccacttt 1236155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 426
Target Start/End: Original strand, 33462834 - 33462901
Alignment:
Q  359 ttcaggtgtcaaactggttcattaatgcaagggtacggctatggaaaccaatgatagaagaaatgtac 426  Q
    ||||||| |||||||||||||||||||| ||||| ||  | |||||||| ||| ||||||| ||||||    
T  33462834 ttcaggtatcaaactggttcattaatgctagggttcgattgtggaaacccatggtagaagatatgtac 33462901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 852 - 951
Target Start/End: Complemental strand, 28164913 - 28164813
Alignment:
Q  852 tcattaaactcacctcattaatgtttttactaccgcaagataagggtaaaatta-aaaaatatcactttttaataatgacttaaatgt-gtcaattcact 949  Q
    ||||||||  |||||||||||||| ||||||||  ||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |||||| ||||    
T  28164913 tcattaaatccacctcattaatgtctttactacttcaagacaagggtaaaattagaaaaatatcacttttt-ataatgacttaaatgtggtcaatccact 28164815  T
Q  950 tt 951  Q
    ||    
T  28164814 tt 28164813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 852 - 951
Target Start/End: Complemental strand, 39487637 - 39487537
Alignment:
Q  852 tcattaaactcacctcattaatgtttttactaccgcaagataagggtaaaatta-aaaaatatcactttttaataatgacttaaatgtg-tcaattcact 949  Q
    ||||||||| || ||||||||||| ||||||||  ||| | ||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||    
T  39487637 tcattaaacacatctcattaatgtctttactactccaaaacaagggtaaaattagaaaaatatcacttttt-ataatgacttaaatgtgatcaatccact 39487539  T
Q  950 tt 951  Q
    ||    
T  39487538 tt 39487537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 360 - 440
Target Start/End: Complemental strand, 7301740 - 7301660
Alignment:
Q  360 tcaggtgtcaaactggttcattaatgcaagggtacggctatggaaaccaatgatagaagaaatgtacaaagaagagtttgg 440  Q
    ||||||| | || |||||||||||||| ||||| || || |||||||||||| | ||||||||||||||||||||||||||    
T  7301740 tcaggtggcgaattggttcattaatgcgagggtgcgtctttggaaaccaatggtcgaagaaatgtacaaagaagagtttgg 7301660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 866 - 939
Target Start/End: Original strand, 931843 - 931917
Alignment:
Q  866 tcattaatgtttttactaccgcaagataagggtaaaatt--aaaaaatatcactttttaataatgacttaaatgtg 939  Q
    |||||||||| ||||||||  ||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  931843 tcattaatgtctttactactccaagacaagggtaaaattgcaaaaaatatcacttttt-ataatgacttaaatgtg 931917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 837 - 951
Target Start/End: Complemental strand, 32742224 - 32742109
Alignment:
Q  837 atttcaagttcaccttcattaaactcacctcattaatgtttttactaccgcaagataagggtaaaatta-aaaaatatcactttttaataatgacttaaa 935  Q
    |||||||||| ||| ||||||||  ||| |||||||||| ||||||||  ||||| ||||||||||||| |||||||  ||||||| |||||||||||||    
T  32742224 atttcaagtttaccctcattaaaaccacttcattaatgtctttactactccaagacaagggtaaaattagaaaaataatacttttt-ataatgacttaaa 32742126  T
Q  936 tgt-gtcaattcacttt 951  Q
    ||| |||||| ||||||    
T  32742125 tgtggtcaatccacttt 32742109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 826 - 951
Target Start/End: Original strand, 37904593 - 37904718
Alignment:
Q  826 taaatgcaataatttcaagttcaccttcattaaactcacctcattaatgtttttactaccgcaagataagggtaaaa-ttaaaaaatatcactttttaat 924  Q
    ||||||| | ||||| ||||| ||| ||||||||||||||| ||||||||  |||||||  ||||| |||||||||| | ||||||||||||||||  ||    
T  37904593 taaatgccacaattttaagtttaccctcattaaactcaccttattaatgtcattactactccaagacaagggtaaaactgaaaaaatatcactttt--at 37904690  T
Q  925 aatgacttaaatgt-gtcaattcacttt 951  Q
    ||||| |||||||| |||||| ||||||    
T  37904691 aatgatttaaatgtggtcaatccacttt 37904718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 852 - 953
Target Start/End: Complemental strand, 647899 - 647798
Alignment:
Q  852 tcattaaactcacctcattaatgtttttactaccgcaagataagggtaaaattaaaaaatatcactttttaataatgacttaaatgt-gtcaattcactt 950  Q
    ||||||||  ||| |||||||||| ||||||||  ||||| ||| ||||||||||||||||  || |||| |||||||||||||||| |||||| |||||    
T  647899 tcattaaaaccacttcattaatgtctttactacttcaagacaagagtaaaattaaaaaataatacctttt-ataatgacttaaatgtagtcaatccactt 647801  T
Q  951 ttt 953  Q
    |||    
T  647800 ttt 647798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 6084639 - 6084577
Alignment:
Q  360 tcaggtgtcaaactggttcattaatgcaagggtacggctatggaaaccaatgatagaagaaat 422  Q
    |||||||||||| |||||||| |||||||| ||| |||| |||||||||||| | ||||||||    
T  6084639 tcaggtgtcaaattggttcataaatgcaagagtaaggctttggaaaccaatggtggaagaaat 6084577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 836 - 910
Target Start/End: Original strand, 10023827 - 10023902
Alignment:
Q  836 aatttcaagttcaccttcattaaactcacctcattaa-tgtttttactaccgcaagataagggtaaaattaaaaaa 910  Q
    ||||||||||| ||| | ||||||| ||||||||||| | ||||||||||  ||||| ||||||||||||| ||||    
T  10023827 aatttcaagtttacccttattaaacccacctcattaattttttttactactccaagacaagggtaaaattagaaaa 10023902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 866 - 932
Target Start/End: Original strand, 36836834 - 36836900
Alignment:
Q  866 tcattaatgtttttactaccgcaagataagggtaaaatt-aaaaaatatcactttttaataatgactt 932  Q
    |||||||||| ||||||||   |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  36836834 tcattaatgtctttactactctaagacaagggtaaaattgaaaaaatatcacttttt-ataatgactt 36836900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 826 - 936
Target Start/End: Complemental strand, 14043326 - 14043215
Alignment:
Q  826 taaatgcaataatttcaagttcaccttcattaaactcacctcat---taatgtttttactaccgcaagataagggtaaaatt-aaaaaatatcacttttt 921  Q
    ||||||| | ||||| ||||| ||| ||||||||||||| ||||   |||||| |  |||||  ||||| |||||||||||| |||||||||||||||||    
T  14043326 taaatgcgacaattttaagtttaccctcattaaactcacttcatcattaatgtct--actactccaagacaagggtaaaattgaaaaaatatcacttttt 14043229  T
Q  922 aataatgacttaaat 936  Q
     |||||| |||||||    
T  14043228 -ataatgtcttaaat 14043215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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