View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470-Insertion-11 (Length: 440)
Name: NF1470-Insertion-11
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470-Insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 30651728 - 30651496
Alignment:
| Q |
8 |
gtgaagcataatgggaaagttgtggggtgtaaaagtgcttgtttggctacaaaatcagataagtattgttgcattggtgaatttgctgatccgaaaattt |
107 |
Q |
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| T |
30651728 |
gtgaagcataatgggaaagttgtggggtgtaaaagtgcttgtttggctacaaaatcagataagtattgttgcactggtgaatttgctgatccgaaaattt |
30651629 |
T |
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| Q |
108 |
gcaagccaactatgtttgctcgtgtttttaagagtgtttgtcctcatgcttatagctatgcttatgatgatgcaaccgggcttatgtcttgtttggcaaa |
207 |
Q |
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| T |
30651628 |
gcaagccaactatgtttgctcgtgtttttaagagtgtttgtcctcatgcttatagctatgcttatgatgatgcaaccgggcttatgtcttgtttggcaaa |
30651529 |
T |
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| Q |
208 |
tcgttatgccattacattttgccctccatgatg |
240 |
Q |
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| T |
30651528 |
tcgttatgccattacattttgccctccatgatg |
30651496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 323 - 440
Target Start/End: Complemental strand, 30651413 - 30651296
Alignment:
| Q |
323 |
aaggttagtgattcaaagtactatgtcatctggaattttgattttgtcatgtaataaagatgtttaattacttcaattatttaagttgttgattgagcat |
422 |
Q |
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| T |
30651413 |
aaggttagtgattcatagtactatgtcatctggaattttgattttgtcatgtaagaaagatgtttaattacttcaattatttaagttgttgattgagcat |
30651314 |
T |
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| Q |
423 |
tcaacattgctattatat |
440 |
Q |
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| T |
30651313 |
tcaacattgctattatat |
30651296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 22787252 - 22787091
Alignment:
| Q |
17 |
aatgggaaagttgtggggtgtaaaagtgcttgtttggctacaaaatcagataagtattgttgcattggtgaatttgctgatccgaaaatttgcaagccaa |
116 |
Q |
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|||||||||||||| || |||||||||||||||||||||| |||| | ||| |||||||||| ||| || | | ||||||| |||| ||| || || | |
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| T |
22787252 |
aatgggaaagttgttggttgtaaaagtgcttgtttggctatgcaatctgctaaatattgttgcactggagattattctgatcctaaaacttgtaaaccta |
22787153 |
T |
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| Q |
117 |
ctatgtttgctcgtgtttttaagagtgtttgtcctcatgcttatagctatgcttatgatgat |
178 |
Q |
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| T |
22787152 |
cactttttgctaatctctttaaggctatttgccctaaagcttatagttatgcttatgatgat |
22787091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 41458122 - 41458154
Alignment:
| Q |
146 |
tgtcctcatgcttatagctatgcttatgatgat |
178 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
41458122 |
tgtcctcaagcttatagctatgcttatgatgat |
41458154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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