View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470-Insertion-12 (Length: 428)
Name: NF1470-Insertion-12
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470-Insertion-12 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 428
Target Start/End: Original strand, 35776359 - 35776774
Alignment:
| Q |
8 |
cacatgaccttgtactggaaatggtacaaatacagcatgaggcttttgatggatatgcgtagagggagaataagaatccatttttgttcaaatatcacta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35776359 |
cacatgaccttgtactggaaatggtacaaatacagcatgaggcttttgttgaatatgcgtagagggagaataagaatccatttttgttcaaatatcacta |
35776458 |
T |
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| Q |
108 |
ttgttacaatgtttgtgaatttatacgagacaaacttgtacaatggcggtggtgatatagatttgccctgcttggaggtcggtcagaaagaacaaagata |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35776459 |
ttgttacaatgtttgtgaatttatacgagacaaacttgtacaatggcggtggtgatatagatttgccctgcttggaggtcggtcagaaagaacaaagata |
35776558 |
T |
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| Q |
208 |
tagtgaaccttatctcaatattgctgcaagcaaattctataatttgttcgttataagtttataaatatttaataaatatttttttnnnnnnnnnnnnctc |
307 |
Q |
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| T |
35776559 |
tagtgaaccttatctcaatattgctgcaagcaaattctataatttgtttgttataagtttataaatatttaataaatattt-----aaaaaaaaaaaatg |
35776653 |
T |
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| Q |
308 |
aagataattgtcactgaaaataatttaaaatcttttagttgaagacattttacattagaagattaatttgagtgtactttcggtctcttaagtatcacag |
407 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35776654 |
aagataattgtcactgaagataatttaaaatcttttagttgaagacattttacattagaagattaatttgagtgtactttcggtctcttaagtatcatag |
35776753 |
T |
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| Q |
408 |
ttttgtaattttggcacctca |
428 |
Q |
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| T |
35776754 |
ttttgtaattttggcacctca |
35776774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 35854674 - 35854721
Alignment:
| Q |
8 |
cacatgaccttgtactggaaatggtacaaatacagcatgaggcttttg |
55 |
Q |
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| T |
35854674 |
cacatgaccttgtgctggaaatggtactaatacaacatgaggcttttg |
35854721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 35869283 - 35869330
Alignment:
| Q |
8 |
cacatgaccttgtactggaaatggtacaaatacagcatgaggcttttg |
55 |
Q |
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| T |
35869283 |
cacatgaccttgtgctggaaatggtgctaatacaacatgaggcttttg |
35869330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 328 - 424
Target Start/End: Complemental strand, 1023 - 928
Alignment:
| Q |
328 |
taatttaaaatcttttagttgaagacattttacattagaagattaatttgagtgtactttcggtctcttaagtatcacagttttgtaattttggcac |
424 |
Q |
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||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | || |||||||||||||| |
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| T |
1023 |
taatttaaaatattttagtggaagacattttacatt-gaagattaatttgagtgtactttcggcctcttaagtatcatatttgtgtaattttggcac |
928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 328 - 424
Target Start/End: Complemental strand, 1023 - 928
Alignment:
| Q |
328 |
taatttaaaatcttttagttgaagacattttacattagaagattaatttgagtgtactttcggtctcttaagtatcacagttttgtaattttggcac |
424 |
Q |
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||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | || |||||||||||||| |
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| T |
1023 |
taatttaaaatattttagtggaagacattttacatt-gaagattaatttgagtgtactttcggcctcttaagtatcatatttgtgtaattttggcac |
928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 1884 - 1828
Alignment:
| Q |
8 |
cacatgaccttgtactggaaatggtacaaatacagcatgaggcttttgatggatatg |
64 |
Q |
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||||||||||||| ||||||||||||||||||||||||| || ||||| ||| |||| |
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| T |
1884 |
cacatgaccttgtgctggaaatggtacaaatacagcatgtggtttttgttgggtatg |
1828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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