View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470-Insertion-13 (Length: 341)
Name: NF1470-Insertion-13
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470-Insertion-13 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 102 - 340
Target Start/End: Original strand, 6395194 - 6395433
Alignment:
| Q |
102 |
tctggaaatttatgagatcccgtaagatcaaaggtaagg-gaagactttcttttttactagtttaagagtttatagtgttactgttcctatagtatatat |
200 |
Q |
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| T |
6395194 |
tctggaaatttttgagatcccgtaagatcaaaggtaaagagaagacttt-ttttttactagtttaagagtttatagtgttactgctcctatagtatatat |
6395292 |
T |
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| Q |
201 |
atcatacaaaatgcatatgcaaaa-aataggtacattataacagttgatgtttgttggccaactatgaaatttcttcccattctcatcaattttttctga |
299 |
Q |
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| T |
6395293 |
ctcatataaaatgcatatgcaaaaaaataggtacattataacagttgatacatgttagccaactatgaaatttcttcccattctcatcaatttcttctga |
6395392 |
T |
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| Q |
300 |
atttgaaactggtttttataatttgtgtgttcaatttgcag |
340 |
Q |
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| T |
6395393 |
atttgaaactggtttttataatttgtgtgttcaatttgcag |
6395433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 43597806 - 43597878
Alignment:
| Q |
265 |
tgaaatttcttcccattctcatcaattttttctgaatttgaaactggtttttataatttgtgtgttcaatttg |
337 |
Q |
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| T |
43597806 |
tgaaatttcttaccattctcatcaatttcttctgaatttgaagctaatttttctagtatatgtgttcaatttg |
43597878 |
T |
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