View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470-Insertion-15 (Length: 283)
Name: NF1470-Insertion-15
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470-Insertion-15 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 42305299 - 42305033
Alignment:
| Q |
13 |
ggcatagtcaagagaagtgctttccgacacataattgctagaggtgattgagttggcaatttcttcaatgcttgttttggaaccctttcaagttcacgtg |
112 |
Q |
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| T |
42305299 |
ggcatagtcaagagaagtgcttttcgacacataattgctggaggtgattgagttggcaatttcttcaatgcttgttttggaaccctttcaagttcacgtg |
42305200 |
T |
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| Q |
113 |
ctaattcttcactaccaacattggaaattacttgaaaaaatataccaattggatcggagattagaatggatgtaaggtgtaacggagttatttcagcatt |
212 |
Q |
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| T |
42305199 |
ctaattcttcactaccaacattggaa-ttacttgaaaaagtataccaattggattggagattagaatggatgtaaggtgtaacggagttatttcagcatt |
42305101 |
T |
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| Q |
213 |
tcctaagcttattgatagtctttttagcactaacaagttcctcatacgccttgcaagtaaaatggtct |
280 |
Q |
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| T |
42305100 |
tcctaagcttattgatagtctttttagcactaacaagttcctcttactccttgcaagtaaaatggtct |
42305033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 42304443 - 42304675
Alignment:
| Q |
17 |
tagtcaagagaagtgctttccgacacataat-tgctagaggtgattgagttggcaatttcttcaatgcttgttttg-gaaccctttcaagttcacgtgct |
114 |
Q |
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| T |
42304443 |
tagtcaagagaagtgcttttcgatacataatctgctggaggtgactgagttggcaatttcttcaatgcttgtttttagaaccctttcaagttcacgtgct |
42304542 |
T |
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| Q |
115 |
aattcttcactaccaacattggaaattacttgaaaaaatataccaattggatcggagattagaatggatgtaaggtgtaacggagttatttcagcatttc |
214 |
Q |
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| T |
42304543 |
aattcttcaccaccaacattggaacttacttggaaaaata-accaaatggat-----attagaatggatgcaaggtataagggagttatctcaacatgtc |
42304636 |
T |
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| Q |
215 |
ctaagcttattgatagtctttttagcactaacaagttcct |
254 |
Q |
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| T |
42304637 |
ctaaacttattgctagtc-tcttagcactaacaagttcct |
42304675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 205
Target Start/End: Complemental strand, 45465916 - 45465764
Alignment:
| Q |
53 |
gaggtgattgagttggcaatttcttcaatgcttgttttggaaccctttcaagttcacgtgctaattcttcactaccaacattggaaattacttgaaaaaa |
152 |
Q |
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| T |
45465916 |
gaggagattgagatggaagtttctttaatgcttgtttcaaaacacgttcaacggcacgtgctgattcttcaccagcaacatttgaaattgcttggaagaa |
45465817 |
T |
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| Q |
153 |
tataccaattggatcggagattagaatggatgtaaggtgtaacggagttattt |
205 |
Q |
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| T |
45465816 |
aataccgttaggatcagaaactagaattgatgcaaggtgtaagggagtgattt |
45465764 |
T |
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