View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470-Insertion-2 (Length: 921)
Name: NF1470-Insertion-2
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470-Insertion-2 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 298 - 921
Target Start/End: Complemental strand, 7235929 - 7235307
Alignment:
| Q |
298 |
tgttagaatacagagacagttgaccacaaccaccaaaatcattattcatcattgtgtaaataaatgtagttaattatacaatagctcctaccttaattgg |
397 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7235929 |
tgttagaatacagagacaattgaccacaatcaccaaaatcattattcatcattgtgtaaataaatgtagttaattatacaataactcctaccttaattgg |
7235830 |
T |
|
| Q |
398 |
agtctatgtattgttgtatatatgtttgccaaatgaatgaaaatagtaaggcagtataattcttacatggtatcacgagtcggatcctaaaacacaaacc |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7235829 |
agtctatgtattgttgtatatatgtttgccaaatgaatgaaaatagtcagacagta-aattcttacatggtatcacgagtttgatcctaaaacacaaacc |
7235731 |
T |
|
| Q |
498 |
tgctgcaactctctttctttttcatcaatggcagaaaacaaaaactttcaccccgcccttgctgtgaacaatatcagaaacttcattcccatcactctag |
597 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7235730 |
tgctgcaattctttttctttttcatcaatggcagaaaacaaaaactttcaccccgcccttgctgtgaacaatatcagaaacttcattcccatcactctag |
7235631 |
T |
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| Q |
598 |
agatggaaaccaaccattactccacatgggcagaattattcaaaattcattgcaccgtctaccaagttattgatcacataatctcaaccacaccagaaat |
697 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7235630 |
agatggaaaccaaccattactccacatgcgcagaattattcaaaattcattgcaccgtctaccaagttattgatcacataatcccaaccacaccagaaat |
7235531 |
T |
|
| Q |
698 |
agaatcatcaaaggaaaaagaaagggcaacagccggtaacaaagaaggatctgttgtagaaaaggaaaaatctgccgagagtaacaaagaacagtggtca |
797 |
Q |
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||||||||||||| ||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7235530 |
agaatcatcaaagaaaaaagaaaaagcaatagccggtaacaaagaaggatccgttgtagaaaaggaaaaatctgccgagagtaacaaagaacaatggtca |
7235431 |
T |
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| Q |
798 |
cgcctggatgcaatcgttctccaatggatttacggaacgatctccaccgacctccttcacaccatcatgtcacctggttcaaccgcacaacaaacattgg |
897 |
Q |
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| T |
7235430 |
cgcctggatgcaatcgttctccaatggatttacggaacgatctccaccgacctccttcacaccatcatgtcacctggttcaaccgcacagcaaacatggg |
7235331 |
T |
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| Q |
898 |
agcgattggaaaacatcttccagg |
921 |
Q |
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| T |
7235330 |
agcgattggaaaacatcttccagg |
7235307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 298 - 464
Target Start/End: Complemental strand, 7231565 - 7231399
Alignment:
| Q |
298 |
tgttagaatacagagacagttgaccacaaccaccaaaatcattattcatcattgtgtaaataaatgtagttaattatacaatagctcctaccttaattgg |
397 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
7231565 |
tgttagaatacagagacagttgaccacaatcaccaaaatcattattcatcattgtgtaaataaatgtagttaattatacaataactccaaccttaattgg |
7231466 |
T |
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| Q |
398 |
agtctatgtattgttgtatatatgtttgccaaatgaatgaaaatagtaaggcagtataattcttaca |
464 |
Q |
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| T |
7231465 |
agtctatgtattgttgtatatatgtttgccaaatgaatgaaaatagtcaggcagtataattcttaca |
7231399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 421 - 921
Target Start/End: Complemental strand, 19655147 - 19654647
Alignment:
| Q |
421 |
gtttgccaaatgaatgaaaatagtaaggcagtataattcttacatggtatcacgagtcggatcctaaaacacaaacctgctgcaactctctttctttttc |
520 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19655147 |
gtttgccaaatgaatgaaaatggacaggcagtataattcttacatggtatcacgagtctgatcctaaaacacaaacctgctgcaactctctttctttttc |
19655048 |
T |
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| Q |
521 |
atcaatggcagaaaacaaaaactttcaccccgcccttgctgtgaacaatatcagaaacttcattcccatcactctagagatggaaaccaaccattactcc |
620 |
Q |
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| T |
19655047 |
atcaatgggagaaaacaaaaactttcaccccgcccttgctgtgaacaatatcagaaacttcattcccatcactctagagatggaaaccaaccattactcc |
19654948 |
T |
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| Q |
621 |
acatgggcagaattattcaaaattcattgcaccgtctaccaagttattgatcacataatctcaaccacaccagaaatagaatcatcaaaggaaaaagaaa |
720 |
Q |
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| T |
19654947 |
acatgggcagaattattcaaaattcattgcaccgtctaccaagttattgatcacataatcccaaccacaccagaaacagaatcatcaaaggaaaaagaaa |
19654848 |
T |
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| Q |
721 |
gggcaacagccggtaacaaagaaggatctgttgtagaaaaggaaaaatctgccgagagtaacaaagaacagtggtcacgcctggatgcaatcgttctcca |
820 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19654847 |
aagcaacagccggtaacaaacaaggatccgttgtagaaaaggaaaaatttgccgagagtaacaaagaacagtggtcacgcctagatgcaatcgttctcca |
19654748 |
T |
|
| Q |
821 |
atggatttacggaacgatctccaccgacctccttcacaccatcatgtcacctggttcaaccgcacaacaaacattggagcgattggaaaacatcttccag |
920 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19654747 |
atggatttacggaacgatctccaccgacctccttcacacaatcatgtcacctggttcaaccgcacaacaaacatgagagcgattggaaaacatcttccag |
19654648 |
T |
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| Q |
921 |
g |
921 |
Q |
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| T |
19654647 |
g |
19654647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 298 - 386
Target Start/End: Complemental strand, 19655391 - 19655304
Alignment:
| Q |
298 |
tgttagaatacagagacagttgaccacaaccaccaaaatcattattcatcattgtgtaaataaatgtagttaattatacaatagctcct |
386 |
Q |
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||||||||||| || ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
19655391 |
tgttagaatac-gaaacagttgaccacagtcatcaaaatcattattcatcattgtgtaaataaatgtagttaattgtacaataactcct |
19655304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 4e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 12709200 - 12709322
Alignment:
| Q |
176 |
gcatttgcttctcattcttgccttccttcctaggtatctcggcttgcaccaccaacgaagttatttaacttgctggttgttccgtcttaccttcttccgt |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12709200 |
gcatttgcttctcattcttgccttccttcctaggtatctcggcttgcgccaccaacgaagttatttaacttgttggttgttccgtcttaccttcttccgt |
12709299 |
T |
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| Q |
276 |
accttcggctaccatctgtctct |
298 |
Q |
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| T |
12709300 |
accttcggctgccttctgtctct |
12709322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 12709042 - 12709141
Alignment:
| Q |
18 |
cttaaggtcagaatggggtcctcttcttcggttttcacttcattagaatcttccccaatttcactaggattttcctcttcacttacctcttcatggaaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12709042 |
cttaaggtcagaatggggtcctcttcttcggttttcacttcattagaatcctccccaatttcactaggattttcctcttcacttacctcttcatggaaag |
12709141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 781 - 884
Target Start/End: Original strand, 17613014 - 17613117
Alignment:
| Q |
781 |
acaaagaacagtggtcacgcctggatgcaatcgttctccaatggatttacggaacgatctccaccgacctccttcacaccatcatgtcacctggttcaac |
880 |
Q |
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|||||||||| | ||||||||| |||| |||| ||| | ||| |||||| |||| |||||||||||||| ||||| || ||| |||||||||||||||| |
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| T |
17613014 |
acaaagaacaatagtcacgcctagatgtaatcattcacaaatttatttacagaacaatctccaccgaccttcttcaaacaatcttgtcacctggttcaac |
17613113 |
T |
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| Q |
881 |
cgca |
884 |
Q |
| |
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|||| |
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| T |
17613114 |
cgca |
17613117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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