View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470-Insertion-4 (Length: 976)
Name: NF1470-Insertion-4
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470-Insertion-4 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 710; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 8 - 976
Target Start/End: Original strand, 20423003 - 20423970
Alignment:
| Q |
8 |
gtaattttatccttttaattttatgaaggatctcaactggaagggtgatataaagtcatatttttaataaatctttgatttataaaagctttgatcaata |
107 |
Q |
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| T |
20423003 |
gtaattttatccttttaattttatgaaggatctcaactgtaaaggtgatataaagtcatatttttaataaatctttgatttataaaggctttgatcaata |
20423102 |
T |
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| Q |
108 |
tctaactacccatattttgatatcacttaattcaacttatacatgtcaagcttggattaaatcaataagttttaatcaagcaattggacttatgtgttta |
207 |
Q |
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| T |
20423103 |
tctaactacccatattttgatatcacttaattcaacttatacatgtcaagtttggattaaatcaataagttttaatcaagcaattggacttatgtgttta |
20423202 |
T |
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| Q |
208 |
ataatcttcaccaaggaataatattcaagagaatgtgagtaggattcttggatggaacaattattgcctagaatttacttactttttggttgaactcctg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| || |
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| T |
20423203 |
ataatcttcaccaaggaataatattcaagagaatgtgagtaggattcttggatggaacaattattgtctaaaatttacttactttttggttaaactcttg |
20423302 |
T |
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| Q |
308 |
attaccaaggcctctttcctttgagaaccagctagttaataccnnnnnnntcaagaagttataatgatttgataaaaattattctacaatcaattagata |
407 |
Q |
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| T |
20423303 |
attaccaaggcctctttcctttgagaaccagctagttaataccaaaaaaatcaagaagttttaatgatttgataaaaattattctacaatcaattaga-a |
20423401 |
T |
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| Q |
408 |
gaaggaattttagactcataataacttaattgaggtaggtctannnnnnnncaagttacaataannnnnnnatcaggatcaatcatttgtaagatttagg |
507 |
Q |
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| T |
20423402 |
gaaggaattttagactcataataacttaattgaggt-ggtctattttttttcaagttacaataaattttatatcaggatcaatcatttgtaagatttagg |
20423500 |
T |
|
| Q |
508 |
gtgtaatcaaatatttagcacttagaatgaatattcaatcaaacatgcatattgaaaaccgtcactattcttagagggttgtatttagtaccaattggga |
607 |
Q |
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| T |
20423501 |
ttgtgatcaaatatttagcacttagaatgaatcttcaatcaaacatgcatattgaaaaccctcactattcttatagggttgtatttagtaccaattggga |
20423600 |
T |
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| Q |
608 |
ggccaatactaacattggatcataatgaagagatatcttcgag--nnnnnnnnnnnnnnntgactgtgaaacaatttcaatgtgcagtaacctactcctt |
705 |
Q |
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| T |
20423601 |
ggccaatactaacattggatcattatggagagatatcttcgagtatatatatatatatattgactgtgaaacaatttcaatgtacagtaacctactcctt |
20423700 |
T |
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| Q |
706 |
taagacataacttctatcctatcatatgatgctacaatatgtatttagtaaacaaatacatgttcagctatttgttatttggattaaagtctccatactt |
805 |
Q |
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| T |
20423701 |
taagatataacttctagcctatcatatgatgctacaatatgtatttagtaaacaaatacatattcagttgtttgttatttggattaaagtctccatactt |
20423800 |
T |
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| Q |
806 |
ttatattgtatacactccctataagaccaaccaagtaactaaacttaaagataactctatcttagaacaaccatcatttacatatttctcgaaatggatg |
905 |
Q |
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| T |
20423801 |
ttatattgtatacactccctagaagaccaaccaagtaactaaacttaaagataactctatcttagaaaaaccatcatttacatatttctcgaaatggatg |
20423900 |
T |
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| Q |
906 |
ataatattaaattttg-acacacagggatatttcaacacaattagaaaatatgaaagtaggggaaagaacat |
976 |
Q |
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|| ||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20423901 |
at-atattaaattttgaacac-cagggatatttcaacacgattagaaaatatgaaagtaggggaaagaacat |
20423970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 619
Target Start/End: Complemental strand, 20309823 - 20309793
Alignment:
| Q |
589 |
tatttagtaccaattgggaggccaatactaa |
619 |
Q |
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| T |
20309823 |
tatttagtaccaattgggaggccaatactaa |
20309793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 619
Target Start/End: Complemental strand, 20332014 - 20331984
Alignment:
| Q |
589 |
tatttagtaccaattgggaggccaatactaa |
619 |
Q |
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| T |
20332014 |
tatttagtaccaattgggaggccaatactaa |
20331984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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