View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470-Insertion-5 (Length: 857)
Name: NF1470-Insertion-5
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 215 - 852
Target Start/End: Complemental strand, 8631124 - 8630485
Alignment:
| Q |
215 |
ggataatctttcttgatcaatcacactttcatcatcagaacctaccaataagaagctcaagaaaaagacagttccaactatttattatgcctcgtacgtt |
314 |
Q |
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| T |
8631124 |
ggataatctttcttaatcaatcacactttcatcatcagaacctaccaataagaagctcaagaaaaagacagttccaactatttattatgcctcgtacgtt |
8631025 |
T |
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| Q |
315 |
ttttcttcttcatttcttaccattgctcaatttataaattgttaccttagattgttccagaatttcaatgcctttctctatatcctaaaatttaactaca |
414 |
Q |
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| T |
8631024 |
tttt-ttcttcatttcttaccattgctcaatttataaattgttaccttagattgttccagaatttcaatgcctttctctatatcctaaaatttaactaca |
8630926 |
T |
|
| Q |
415 |
nnnnnnnnnnnnnnnnnctcatgtactaggagaacacactcacaaattactcaattggttcgtgaattgcgcaaaacttcatacagggtgcccatggctt |
514 |
Q |
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| T |
8630925 |
ttttttgttttgattttctcatgtactaggagaacacactcacaaattactcaattggttcgtgaattgcgcaaaacttcatacagggtgcccatggctt |
8630826 |
T |
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| Q |
515 |
tactggtaggtcgaaggaacccattgcattatgatccttttgaatctgtcattttttctcaatgaaatttatacacatatgtctttttgaacaatgtgaa |
614 |
Q |
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| T |
8630825 |
tactggtaggtcgaaggaacccattgcattatgatccttttgaatctgtcattttttctcaatgaaatttatacacatatgtctttttgaacaatgtgaa |
8630726 |
T |
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| Q |
615 |
cttatttaatatattaatctgtcaatttaatttgtttgtcaatcatattacaactaaattatatagcattgttggcgagatagtgagataccaactaata |
714 |
Q |
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| T |
8630725 |
cttatttaatatattaatctgtcaatttaatttgtttgtcaatcatattacaactaaattatatagcattgttggcgagatagtgagataccaactaata |
8630626 |
T |
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| Q |
715 |
tgataaggattctaatttagtcgaggttttatgtgaaatttaccatgccattttacctgtcatatttgcata---tgagagatatattacgttaagcacc |
811 |
Q |
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| T |
8630625 |
tgataaggattctaatttagtcgaggttttatgtgaaatttaccatgccattttacctgtcatatttgcatatactgagagatatattacgttaagcacc |
8630526 |
T |
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| Q |
812 |
ataatcttaaaatcatatggatctagctgagtatttccccc |
852 |
Q |
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| T |
8630525 |
ataatcttaaaatcatatggatctagctgagtatttccccc |
8630485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 8631334 - 8631160
Alignment:
| Q |
8 |
gagtcccccaccggttccggtaaatccctttctcttctctgctcctctctcgcttggcagcaacactataaacccacccctccgcaaaccgccgccgatc |
107 |
Q |
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| T |
8631334 |
gagtcccccaccggttccggtaaatccctttctcttctctgctcctctctcgcttggcagcaacactataaacccacccctccgcaaaccgccgccgatc |
8631235 |
T |
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| Q |
108 |
ctctcgctaacggtggtggatttcttctcgacgaggttctacttcctttaggtatgtatcgcccttcaaattcca |
182 |
Q |
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| T |
8631234 |
ctctcgctaacggtggtggatttcttctcgacgaggttctacttcctttaggtatgtatcgcccttcaaattcca |
8631160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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