View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470-Insertion-6 (Length: 846)
Name: NF1470-Insertion-6
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470-Insertion-6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 344 - 846
Target Start/End: Complemental strand, 43884182 - 43883682
Alignment:
| Q |
344 |
cttaaaatcatttgtactgttggagatatgaactttcctgtgaattagaaaatgaatgtgatggtacaaaataactgttattcatggtaaaaagatgtct |
443 |
Q |
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| T |
43884182 |
cttaaaatcatttgtactgttggagatatgaactttcctgtgaattagaaaatgaatgtgattgtacaaaataactgttattcatggtaaa--gatgtct |
43884085 |
T |
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| Q |
444 |
tctaacttttgctgtggtaataagtgtggcaggcatatctcttggttcacatcaaagtatcaattaaaaattaacttttaacatgttggtacaatactat |
543 |
Q |
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| T |
43884084 |
tctaactttttctgaggtaataagtgtggcagtcatatctcttggttcacatcaaagtatcaattaaaaattaacttttaacatgttggtacaatactag |
43883985 |
T |
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| Q |
544 |
tttaagaactcttgcacacaccatcattttcttttgaagttttataaaatttaattataaattgtgatattagcccaattgaattnnnnnnnntgatcct |
643 |
Q |
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| T |
43883984 |
tttaagaactcttgcacacaccatcattttcttttgaagttttataaaatttaattataaattgtgatattagcccaattgaattaaaaaaaatgatcct |
43883885 |
T |
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| Q |
644 |
acaactttaataaaatgagtcacaaatagataaataagtctctgtgtgtgattattattttaaaaaatgtcattgacctcattgatattattgataaaca |
743 |
Q |
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| T |
43883884 |
acaactttaataaaatgagtcacaaatagataaataagtctctgtgtatgattattattttaaaaaatgtcattgacctcattgatattattgataaaca |
43883785 |
T |
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| Q |
744 |
ttaagctaagtacagattctcttaagcttttggcccaagctcttacagttcggcactaccttgagcacatcgatttgttgaacttctgttataaaatttg |
843 |
Q |
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| T |
43883784 |
ttaagctaagtacagattctcttaagcttttggcccaagctcttacagttcagcactaccttgagcacatcgatttgttgaacttctgttataaaatttg |
43883685 |
T |
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| Q |
844 |
ttt |
846 |
Q |
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| T |
43883684 |
ttt |
43883682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 40 - 320
Target Start/End: Complemental strand, 43884450 - 43884183
Alignment:
| Q |
40 |
tagaaactaaattgatggattttagatagtttaatgactacttattattatatttatataggtt-agagactaaattgagtactaatctatagtacaaat |
138 |
Q |
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| T |
43884450 |
tagaaactaaattgatggattttagatagtttaatgactacttattattatatttatataggtttagagactaaattgagtactaatctagagtacaaat |
43884351 |
T |
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| Q |
139 |
tgatggaaaaaacttgattgttatctttcaaagtcgcatgtaaacagactttgataaagacactactatagtggttgcttcaatgatggttgatttcttc |
238 |
Q |
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| T |
43884350 |
tgat--------------tgttatctttcaaagtcacatgtaaacagactttgataaagacactactattgtggttgcttcaatgatggtttatttcttc |
43884265 |
T |
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| Q |
239 |
atatgaaaccaaaattggagttcacaagttgtaaattaatcgttgcagctgaatgttgatgttcaatacacttatttactag |
320 |
Q |
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| T |
43884264 |
atctgaaaccaaaattggagttcacaagttgtaaattaatcgttgcagctgaatcttgatgttcaatacacttatttactag |
43884183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 43884515 - 43884480
Alignment:
| Q |
5 |
acaacactaactcatttgttaaagtatacggaaatt |
40 |
Q |
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| T |
43884515 |
acaacactaactcatttgttaaagtatacggaaatt |
43884480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 304
Target Start/End: Complemental strand, 29158233 - 29158119
Alignment:
| Q |
198 |
acactactatagtggttgcttc-----aatgatggttgatttcttcatatgaaaccaa---aattggagttcacaagttgtaaattaatcgttgcagctg |
289 |
Q |
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| T |
29158233 |
acactactgtagtggttgcttcttgacaataatggttaatttcttcatctgaaaacaacaaaattggaggtcacaggttctaaatgaatccttgcagctg |
29158134 |
T |
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| Q |
290 |
aatgttgatgttcaa |
304 |
Q |
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| T |
29158133 |
aatattgatattcaa |
29158119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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