View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1470-Insertion-7 (Length: 838)
Name: NF1470-Insertion-7
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470-Insertion-7 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 717; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 7 - 837
Target Start/End: Original strand, 45767871 - 45768698
Alignment:
| Q |
7 |
accatgcacattattactaagcaaaatagtcaaaccatttcatgatttacaaatcatcatacttgtaacatcaagtcaacaaagtaacttttgatcgtgt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45767871 |
accatgcacattattactaagcaaaatagtcaaaccaattcatgatttacaaatcatcatacttgtaacatcaagtcaacaaagtaacttttgatcgtgt |
45767970 |
T |
|
| Q |
107 |
gaacaatatagaatagaatacactacaaaagtacaggtcaaaaggttactattacttagtaattacattttaaaaagctgccacacaccnnnnnnnnnnn |
206 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
45767971 |
gaacaatagataatagaatacactacaaaagtacaggtcaaaatgttactacta----gtaattacattttaaaaagctgccacacaccaaaaaaataaa |
45768066 |
T |
|
| Q |
207 |
nnnnnnn-tggaaacatgtttcttttttctattttgtggaaaaagtggtaattaaaatgtcttcatacacaagcataagacaagcaatgtgtcaccttaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45768067 |
aaaaaaaatggaaacatgtttcttttttctattttgtggaaaaagtggtaattaaaatgtcttcatacacaagcataagacaagcaatgtgtcaccttaa |
45768166 |
T |
|
| Q |
306 |
attgctacttccaattctattaaaacgactcaaagcaggtgagactttgttgctccttgaatcagaatcattgtctgaattagtagaccctacatcccaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45768167 |
attgctacttccaattctattaaaacgactcaaagcaggtgagactttgttgctccttgaatcagaatcattgtctgaattagtagaccctacatcccaa |
45768266 |
T |
|
| Q |
406 |
agaccttgaaaaggccttctagtagaactgtattcctcaaactcatgcctttgtcttggtgcactttgtgatctaaccttagctttagaagattcagtgt |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45768267 |
agaccttgaaaaggccttctagtagaactgtattcctcaaactcatgcctttgtcttggtgcactttgtgatctaaccttagctctagaagattcagtgt |
45768366 |
T |
|
| Q |
506 |
ttgccatgtaattagggtaaccagagtaaccacctaagaaactccatgaacactcacttcttgtaggtgtaaagggggtatttcttcttacaccacttcc |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45768367 |
ttgccatgtaattagggtaaccagagtaaccacctaagaaactccatgaacactcacttcttgtaggtgtaaagggggtatttcttcttacaccacttcc |
45768466 |
T |
|
| Q |
606 |
atttcttgaagaaacagaaaatgtttgtggactattatcagcagtgcgcgatgctgctacttcttcttttgctttgtgaaacttcaatgagagactttga |
705 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45768467 |
atttcttgaagaagcagaaaatgtttgtggactattatcagcagtgcgcgatgctgctacttcttcttttgctttgtgaaacttcactgagagactttga |
45768566 |
T |
|
| Q |
706 |
ttttgagcttttgttgaatgttttgatggagactcatttgacatagaattcacattattctcatttttattcaactgtggcttccaagtatctacttcga |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45768567 |
ttttgagcttttgttgaatgttttgatggagattcatttgacatagaattcacattattctcatttttattcaactgtggcttccaagtatctacttcga |
45768666 |
T |
|
| Q |
806 |
gaatcttatcacttttatgttcatcagggtgt |
837 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45768667 |
gaatcttatcacttttatgttcatcagggtgt |
45768698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 452 - 516
Target Start/End: Complemental strand, 46632760 - 46632696
Alignment:
| Q |
452 |
gcctttgtcttggtgcactttgtgatctaaccttagctttagaagattcagtgtttgccatgtaa |
516 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| | || ||||| || || ||||||||| |
|
|
| T |
46632760 |
gcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaa |
46632696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 400 - 578
Target Start/End: Original strand, 39632 - 39810
Alignment:
| Q |
400 |
tcccaaagaccttgaaaaggccttctagtagaactgtattcctcaaactcatgcctttgtcttggtgcactttgtgatctaaccttagctttagaagatt |
499 |
Q |
| |
|
|||||||||||||||| || ||| ||| |||| |||| |||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
39632 |
tcccaaagaccttgaatagacctattagatgaaccgtatctctcaaactcaagcctttgtcttggagcactttgtgacctaaccttagccctagaagatt |
39731 |
T |
|
| Q |
500 |
cagtgtttgccatgtaattagggtaaccagagtaaccacctaagaaactccatgaacactcacttcttgtaggtgtaaa |
578 |
Q |
| |
|
||| |||||||| ||| |||| |||||||||| | || || || | |||||||| ||||||| | ||||||||||| |
|
|
| T |
39732 |
gagtatttgccatataactaggataaccagagtgagcattgaaaaatccccatgaactctcacttttagtaggtgtaaa |
39810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University