View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470-Insertion-9 (Length: 474)
Name: NF1470-Insertion-9
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470-Insertion-9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Original strand, 9473153 - 9473616
Alignment:
| Q |
8 |
ctcttatgcagtcattcatcatgtatggagatacccattcatgctctcacgtcacatgcaggtaaagtgagaaccagaattttggaaggaactaacattg |
107 |
Q |
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| T |
9473153 |
ctcttatgcagtcattcatcatgtatggagatacctattcatgctctcacgtcacatgcaggtaaagtgagaaccagaattttggaaggaactaacattg |
9473252 |
T |
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| Q |
108 |
ttcaatgattctgccttgttgaatgaacctcaacataccaggattttcgacaatcttcggttcctctggagctgccaaccatgctgattatgtttgaaaa |
207 |
Q |
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| T |
9473253 |
ttcaatgattctggcttgttgaatgaacctcaacataccaggattttcgacaatcttcggttcccctggagctgccaaccatgctgattatgtttgaaaa |
9473352 |
T |
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| Q |
208 |
aattcgcggataaccttacgtatgaaaaacttctaataatcttttactgaaaccatcatggccataacaatcaacatcgtaggcatatgtttcatttgtg |
307 |
Q |
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| T |
9473353 |
aagtcgtggatatccttacgtaggaaaaacttctagtaatctttttctaaaaccatcatggccataacaatcaacttcataggcatatgtttcatttgcg |
9473452 |
T |
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| Q |
308 |
tattcgaggtacaaaacgtcgttttctcagtcctccatttccttgatgcgaagtatttttcagttcgtcaactgatcccgattcaacttccttcattttc |
407 |
Q |
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| T |
9473453 |
tattctaggtacaaaatgccgttttctcagtcctccatttcctcgatacgtagtgttttttagttc---acttgatcctgattcaacttccttcattttc |
9473549 |
T |
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| Q |
408 |
tcctttgacttcgactccaagttattatcattttcagaggataactcaagttgttcatttttgttat |
474 |
Q |
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| T |
9473550 |
tcctttgacttcgactccaagttattatcattttcagaggataactcaagttgttcatttttgttat |
9473616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 9492743 - 9492848
Alignment:
| Q |
85 |
aattttggaaggaactaacattgttcaatgattctgccttgttgaatgaacctcaacataccaggattttcgacaatcttcggttcctctggagctgcca |
184 |
Q |
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| T |
9492743 |
aattttggaaagaactaaaactgataaatgattctagcctgtttgatgaacctcaacataccaaaacttttgacaaccttcggttcccctggtgctgcca |
9492842 |
T |
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| Q |
185 |
accatg |
190 |
Q |
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| T |
9492843 |
accatg |
9492848 |
T |
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