View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14700_low_1 (Length: 392)
Name: NF14700_low_1
Description: NF14700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14700_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 12550581 - 12550203
Alignment:
| Q |
1 |
caagcaacattaataattgcaccacttgattatttgttaatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaacct |
100 |
Q |
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| T |
12550581 |
caagcaacattaataattgcaccacttgatcatttgttaatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaacct |
12550482 |
T |
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| Q |
101 |
taatattcaaagatttggtaaataaagatttaaaaagaaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttattt |
200 |
Q |
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| T |
12550481 |
taatattcaaagatttggtaaataaagatttaaaaagaaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttattt |
12550382 |
T |
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| Q |
201 |
gcatgcatcggatacattgttattaccaaccaacctctgcatcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgtt |
300 |
Q |
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| T |
12550381 |
gcatgcatcgaatacattgttattaccaaccaacctctgcatcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgtt |
12550282 |
T |
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| Q |
301 |
gtcttcattgtagggttaaccttaatcacacctttttcattcagatttctcagacgccaacacagtgtttcctcctatg |
379 |
Q |
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| T |
12550281 |
gtcttcattgtagggttaaccttaatcacacctttttcattcagatttctcagacgccaacacagtgtttcctcctatg |
12550203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 9462293 - 9462194
Alignment:
| Q |
1 |
caagcaacattaataattgcaccacttgattatttgttaatcatctt------agacctcagaattagtcactctactttctggtatagatttttatggc |
94 |
Q |
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||||||||||||||||||| | | |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
9462293 |
caagcaacattaataattgttcaagttgattatttgttaatcatcttagtttgagatctcagaattattcactctactttctggtatagacttttctggc |
9462194 |
T |
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