View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14700_low_2 (Length: 322)
Name: NF14700_low_2
Description: NF14700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14700_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 30961472 - 30961748
Alignment:
| Q |
19 |
aaccttcccttaaaaattaggaatttcaagtttctttttcttccaaagttatttttcttccctatcctttcttgattatataatttctaagtcttcctcc |
118 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30961472 |
aaccttcctttaaaaattaggaatttcaagtttctttttcttccaaagttatttttcctccctatcctttcttgattatataatttctaagtcttcctcc |
30961571 |
T |
|
| Q |
119 |
attcctcctactactcctatactccctaggagcctcatcctcttccttctcatagtccttttgattagaggttgatgccttcacattaccctctcttcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30961572 |
attcctcctactactcctatactccctaggagcctcatcctcttccttctcatagtccttttgattagaggttgatgccttcacattaccctctcttcaa |
30961671 |
T |
|
| Q |
219 |
caaaagtaattattcctttactcttcactaatcctcttaatcttcctttgtgcttctctttgaagattagtcatata |
295 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30961672 |
caaaagtaattattcctttaatcttcactaatcctcttaatcttcctttgtgcttctctttgaagattagtcatata |
30961748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 38790659 - 38790437
Alignment:
| Q |
19 |
aaccttcccttaaaaattaggaatttcaagtttctttttcttccaaagttatttttcttcccta-------------tcctttcttgattatataatttc |
105 |
Q |
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||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||| |||||| |||||||||||||| || ||| |
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| T |
38790659 |
aaccttcccttaaaagtaaggaattt-aagtttctttttcttccaaagttattcttcctccctagagaccctaatcatcctttcttgattacatgtttt- |
38790562 |
T |
|
| Q |
106 |
taagtcttcctccattcctcctactactcctatactccctaggagcctcatcctcttccttctcata--gtccttttga-ttagaggttgatgccttcac |
202 |
Q |
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|||||||| ||| || |||||| ||| ||||||||| |||| |||||| ||||||| |||||| |||||||||| || |||||||||| |||||| |
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| T |
38790561 |
taagtctttctcaatgtctcctatgcctc--atactcccttggagtctcatcatcttcctcctcatatagtccttttgacttggaggttgatgacttcac |
38790464 |
T |
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| Q |
203 |
attaccctctcttcaacaaaagtaatt |
229 |
Q |
| |
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|||||||| |||| ||| ||||||||| |
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| T |
38790463 |
attaccctttctttaaccaaagtaatt |
38790437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 38784428 - 38784324
Alignment:
| Q |
19 |
aaccttcccttaaaaattaggaatttcaagtttctttttcttccaaagttatttttcttcccta----tcctttcttgattatataatttctaagtcttc |
114 |
Q |
| |
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|||||| |||||||| |||||||||| || |||||| |||||||||||||||| ||| || ||| |||||| ||||||| || ||||||||||||| |
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| T |
38784428 |
aacctttccttaaaatttaggaattttaaatttcttgttcttccaaagttattcttcctctctaatcctcctttgttgattacat-gtttctaagtcttc |
38784330 |
T |
|
| Q |
115 |
ctccat |
120 |
Q |
| |
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|||||| |
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| T |
38784329 |
ctccat |
38784324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 34081626 - 34081577
Alignment:
| Q |
19 |
aaccttcccttaaaaattaggaatttcaagtttctttttcttccaaagtt |
68 |
Q |
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|||||||| || ||||||||||||| ||||||||||||||||||||||| |
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| T |
34081626 |
aaccttcctttggaaattaggaattttaagtttctttttcttccaaagtt |
34081577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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