View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14702_high_13 (Length: 332)
Name: NF14702_high_13
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 20079405 - 20079102
Alignment:
| Q |
19 |
tgaaagacacatcagagtcatgttcagttgtagcagcactcgtcgcaggcgtctcctttgctacatcaggcagtgtccctggaggcaatgaccaatcagg |
118 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20079405 |
tgaaagacacatcagagtcatgctcagttgtagcagcactcgtcgcaggcgtctcctttgctacatcaggcagtgtccctggaggcaatgaccaatcagg |
20079306 |
T |
|
| Q |
119 |
gaaaccgaatttcgaaggacaacctgcatttgaagtattctctatatgttcattatttggactttacttctcggtcactgcactaatcatgttcctttct |
218 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20079305 |
gaaaccaaatttcgaaggacagcctgcatttgaagtattctcgatatgttcattaattggactttacttctcggtcactgcactaatcatgttcctttct |
20079206 |
T |
|
| Q |
219 |
atacttacttctcgaaaacaggtcgaagacttcaatagaaacttgccattgaaacttctttttgggttaagttctctcttcgtagccattgttgccatgt |
318 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20079205 |
atactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccattgaaacttctttttgggttaagttctctcttcgtagccattgttgccatgt |
20079106 |
T |
|
| Q |
319 |
tcat |
322 |
Q |
| |
|
|||| |
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|
| T |
20079105 |
tcat |
20079102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 20103722 - 20103419
Alignment:
| Q |
19 |
tgaaagacacatcagagtcatgttcagttgtagcagcactcgtcgcaggcgtctcctttgctacatcaggcagtgtccctggaggcaatgaccaatcagg |
118 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| | | | || |
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| T |
20103722 |
tgaaagacacatcacagtcatgctcagttgtagcggcactcgtcgcaggcgtctcctttgctacatcaggcagcgtccccggaggtaatcagaatactgg |
20103623 |
T |
|
| Q |
119 |
gaaaccgaatttcgaaggacaacctgcatttgaagtattctctatatgttcattatttggactttacttctcggtcactgcactaatcatgttcctttct |
218 |
Q |
| |
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||||| | ||||||||||| |||||||| |||||||||||||||| ||| ||| |||||||||||||||| | ||||||||| |||||||||||| || |
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| T |
20103622 |
aaaaccaacattcgaaggacagcctgcattcgaagtattctctatatcttcgttaattggactttacttctctgccactgcactcatcatgttccttgct |
20103523 |
T |
|
| Q |
219 |
atacttacttctcgaaaacaggtcgaagacttcaatagaaacttgccattgaaacttctttttgggttaagttctctcttcgtagccattgttgccatgt |
318 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20103522 |
ttactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccattgaaacttctttttgggtttagttctctcttcgtagccattgttgccatgt |
20103423 |
T |
|
| Q |
319 |
tcat |
322 |
Q |
| |
|
|||| |
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|
| T |
20103422 |
tcat |
20103419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 19903660 - 19903879
Alignment:
| Q |
19 |
tgaaagacacatcagagtcatgttcagttgtagcagcactcgtcgcaggcgtctcctttgctacatcaggcagtgtccctggaggcaatgaccaatcagg |
118 |
Q |
| |
|
||||| ||||| |||||||| | ||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
19903660 |
tgaaaaacacaacagagtcaagctcaattgtggcagcactcgtcgcaggcgtctcctttgctacatcatgcactgtccctggaggcaatgaccaatcagg |
19903759 |
T |
|
| Q |
119 |
gaaaccgaatttcgaaggacaacctgcatttgaagtattctctatatgttcattatttggactttacttctcggtcactgcactaatcatgttcctttct |
218 |
Q |
| |
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|||||| ||||| ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||| |||| || | ||||||||| |
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| T |
19903760 |
gaaaccaaatttaaaaggacaacctgcatttgatttattctctacatgttcattaactggactttacttctctgtcacttcactcatggtattcctttct |
19903859 |
T |
|
| Q |
219 |
atacttacttctcgaaaaca |
238 |
Q |
| |
|
||||| |||| | ||||||| |
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|
| T |
19903860 |
atactcacttgtagaaaaca |
19903879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 319
Target Start/End: Complemental strand, 20130925 - 20130642
Alignment:
| Q |
36 |
tcatgttcagttgtagcagcactcgtcgcaggcgtctcctttgctacatcaggcagtgtccctggaggcaatgaccaatcagggaaaccgaatttcgaag |
135 |
Q |
| |
|
||||| |||| |||||||||| |||| || ||| ||||||| || |||| | |||||||||| ||||||||| | || |||||||| | | |||| |
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| T |
20130925 |
tcatgctcagctgtagcagcaatcgttgccggcatctccttcgcaacattaagcagtgtccccggaggcaataaggaaacagggaaatcatcatcagaag |
20130826 |
T |
|
| Q |
136 |
gacaacctgcatttgaagtattctctatatgttcattatttggactttacttctcggtcactgcactaatcatgttcctttctatacttacttctcgaaa |
235 |
Q |
| |
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||| ||||||| |||| |||| | |||| ||||||| ||||| ||||||| || ||||||||||| ||| |||||||||||||||| | | |||||| |
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| T |
20130825 |
aacatactgcattagaaggattcgcaatatcttcattaattggagtttacttttctgtcactgcactcatcttgttcctttctatactcattgatcgaaa |
20130726 |
T |
|
| Q |
236 |
acaggtcgaagacttcaatagaaacttgccattgaaacttctttttgggttaagttctctcttcgtagccattgttgccatgtt |
319 |
Q |
| |
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||| |||||||| || |||||||||||||| | || |||||| |||| ||| |||| |||||||| ||||||| ||| |||| |
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| T |
20130725 |
acaagtcgaagattttgatagaaacttgccacttaagcttcttattggcctaacttctgtcttcgtatccattgtcgccgtgtt |
20130642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 36893470 - 36893504
Alignment:
| Q |
261 |
ttgccattgaaacttctttttgggttaagttctct |
295 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |
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| T |
36893470 |
ttgccattgaaacttcttcttgggttaagttctct |
36893504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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