View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14702_high_35 (Length: 205)
Name: NF14702_high_35
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_high_35 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 10011390 - 10011186
Alignment:
| Q |
1 |
gtccaaatccaagctctgtggtggtgttctannnnnnnactgatatgaatttgatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaaa |
100 |
Q |
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| T |
10011390 |
gtccaaatccaagctctgtggtggtgttctatttttttactgatatgaatttgatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaaa |
10011291 |
T |
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| Q |
101 |
gnnnnnnnncgcttttgcttcagaaacgagaaagaatatagaacaaaaagataatttttaacgaaannnnnnnatgtccaattctccaaaacaggagcac |
200 |
Q |
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| T |
10011290 |
gaaaaataactcttctgcttcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcac |
10011191 |
T |
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| Q |
201 |
ctctc |
205 |
Q |
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||||| |
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| T |
10011190 |
ctctc |
10011186 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 561652 - 561567
Alignment:
| Q |
120 |
tcagaaacgagaaagaatatagaacaaaaagataatttttaacgaaannnnnnnatgtccaattctccaaaacaggagcacctctc |
205 |
Q |
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|||||||||||||||||||||||| |||| || |||||| || |||| ||||||||||||||||||||||| |||||||| |
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| T |
561652 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaaggaaaaaatttgatgtccaattctccaaaacaggaacacctctc |
561567 |
T |
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