View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14702_low_1 (Length: 789)

Name: NF14702_low_1
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14702_low_1
NF14702_low_1
[»] chr8 (1 HSPs)
chr8 (15-758)||(10317084-10317827)


Alignment Details
Target: chr8 (Bit Score: 728; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 15 - 758
Target Start/End: Complemental strand, 10317827 - 10317084
Alignment:
Q  15 cataggggcaggagagaggccactttttccactcaattcaccaaaatatgttatcaacttaacaaagagatgttggcataccgatccaaatcaacgtccg 114  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10317827 cataagggcaggagagaggccactttttccactcaattcaccgaaatatgttatcaacttaacaaagagatgttggcataccgatccaaatcaacgtccg 10317728  T
Q  115 aatttttcgtccatatgtagagttcttcgttatgtaaaaagatttcttgtattgaatcctggttacaatagagagacagacccgccagtgccacttgtag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10317727 aatttttcgtccatatgtagagttcttcgttatgtaaaaagatttcttgtattgaatcctggttacaatagagagacagacccgccagtgccacttgtag 10317628  T
Q  215 attactgtgatatagagtcagcacttttgaggaagtttccttcttggggaagttctgaattgtcgccaatatctaatattccttttcaaatgtttgctta 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10317627 attactgtgatatagagtcagcacttttgaggaagtttccttcttggggaagttctgaattgtcgccaatatctaatattccttttcaaatgtttgctta 10317528  T
Q  315 tcgagttattgagcgtgaaaaagtaagaacatgctctagggatttctctgaatctggaagtgatgcttcggcatgtggtgatgagcttgttacttctggt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10317527 tcgagttattgagcgtgaaaaagtaagaacatgctctagggatttctctgaatctggaagtgatgcttcggcatgtggtgatgagcttgttacttctggt 10317428  T
Q  415 gacgagccatttccatccgtaacagaaaagaaatcttcacttgcacctgagattgtaaacaacaggaggcttacgaccaggaaatctctagatatgagga 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10317427 gacgagccatttccatccgtaacagaaaagaaatcttcacttgcacctgagattgtaaacaacaggaggcttacgaccaggaaatctctagatatgagga 10317328  T
Q  515 tcaaacaaccaggttagcttcgaacttttcttcggctcttgttagtagtatgcatgaaattcttcaatacagcaatgcaggtttgtttaagaagctaatg 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10317327 tcaaacaaccaggttagcttcgaacttttcttcggctcttgttagtagtatgcatgaaattcttcaatacagcaatgcaggtttgtttaagaagctaatg 10317228  T
Q  615 ttctaaaaggatagaaattcattaatgacaatttagtgaattttactaacttgatcatttatttttaagttacttacatcatcacatcatgctaatgata 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10317227 ttctaaaaggatagaaattcattaatgacaatttagtgaattttactaacttgatcatttatttttaagttacttacatcatcacatcatgctaatgatg 10317128  T
Q  715 caaaattgcctgcaaggaagaacctcataagtattttagctttc 758  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  10317127 caaaattgcctgcaaggaagaacctcataagtattttacctttc 10317084  T

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