View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14702_low_10 (Length: 404)
Name: NF14702_low_10
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_low_10 |
 | |
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| [»] scaffold0024 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 2997810 - 2998072
Alignment:
| Q |
1 |
aaagctttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2997810 |
aaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgt |
2997909 |
T |
|
| Q |
101 |
cttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcactgattgaaggtggctcagctccttcaagcatggcattgatatcatccac |
200 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2997910 |
ctgcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctctgctccttcaagcatggcattgatatcatccac |
2998009 |
T |
|
| Q |
201 |
caaaccggataatgacatattgagagtcagcaagaaaatgaaaagcttggttgttggaattaa |
263 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2998010 |
caaatcggaaaatgacatattgagagtcagcaagaaaatgaaaagcttggttgttggaattaa |
2998072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 2934258 - 2934014
Alignment:
| Q |
7 |
ttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcatcttcgt |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
2934258 |
ttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgt |
2934159 |
T |
|
| Q |
107 |
taagtttgcgaattttagaggggaccttgtagatgcaacagtcactgattgaaggtggctcagctccttcaagcatggcattgatatcatccaccaaacc |
206 |
Q |
| |
|
| || ||||||| | | |||||||| ||||||||||||||| | ||||||||| ||| ||| || |||||||||||||||||| ||||| | |
|
|
| T |
2934158 |
tgtgtctgcgaataacataagggaccttatagatgcaacagtcatcggttgaaggtgactctgctttgtcgagcatggcattgatatcaataaccaagct |
2934059 |
T |
|
| Q |
207 |
ggataatgacatattgagagtcagcaagaaaatgaaaagcttggt |
251 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2934058 |
ggagagtgacatattgagagtcagcaagaaaatgaaaagcttggt |
2934014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 3004200 - 3004438
Alignment:
| Q |
7 |
ttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcatcttcgt |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
3004200 |
ttgaagtaaatgagtttctgattttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgt |
3004299 |
T |
|
| Q |
107 |
taagtttgcgaattttagaggggaccttgtagatgcaacagtcactgattgaaggtggctcagctccttcaagcatggcattgatatcatccaccaaacc |
206 |
Q |
| |
|
| || ||||||| | |||||||||||||||||||||| | | | ||||||||||| ||| | |||||||||||||||||||||||||| | |
|
|
| T |
3004300 |
tgtgtctgcgaataacataggggaccttgtagatgcaacacttatcg---gaaggtggctcggctgtgttgagcatggcattgatatcatccaccaagct |
3004396 |
T |
|
| Q |
207 |
ggataatgacatattgagagtcagcaagaaaatgaaaagctt |
248 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3004397 |
ggagaatgacatattgagagttagcaagaaaatgaaaagctt |
3004438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 2972665 - 2972415
Alignment:
| Q |
1 |
aaagctttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtg--tatgc |
98 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| | |||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
2972665 |
aaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggtttgaacgtggtgaaaggggccaatggaaacgactttgggagtgtatatgc |
2972566 |
T |
|
| Q |
99 |
atcttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcactgattgaaggtggctcagctccttcaagcatggcattgatatcatcc |
198 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || || ||||| ||||||| |||| |
|
|
| T |
2972565 |
ctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgat---atcc |
2972469 |
T |
|
| Q |
199 |
accaaaccggataatgacatattgaga-gtcagcaagaaaatgaaaagcttggt |
251 |
Q |
| |
|
||||| | ||| | |||||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
2972468 |
accaagcaggagagtgacatcttgagaggtgagcaagaaaatgaaaagcttggt |
2972415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 2926819 - 2926563
Alignment:
| Q |
7 |
ttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcatcttcgt |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||| || |
|
|
| T |
2926819 |
ttgaagtaaatgagtttctgactttccatgttttggagctggggttgaccgtggtgaaaggggccaatagaaacgaccttgggggtgtatgcgtctttgt |
2926720 |
T |
|
| Q |
107 |
taagtttgcgaattttagaggggaccttgtagatgcaacagtcactgattgaaggtggctcagctccttcaagcatggcattgatatcatccaccaaacc |
206 |
Q |
| |
|
| || ||||||| | |||||||||| ||||| ||||||||| | ||||||||| ||| ||| | ||||||| ||||||||| | || ||| | |
|
|
| T |
2926719 |
tgtgtctgcgaataacataggggaccttatagatacaacagtcatcggttgaaggtgactctgctgtgttgagcatggaattgatatccttcagcaagcg |
2926620 |
T |
|
| Q |
207 |
ggataatgacatattgagagtcagcaagaaaatgaaaagcttggttgttggaattaa |
263 |
Q |
| |
|
||| ||||||| |||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
2926619 |
ggaggatgacatcttgagagtcaccaagaaaatgaaaagcttggtctttggaattaa |
2926563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 2951601 - 2951346
Alignment:
| Q |
7 |
ttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcatcttcgt |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| || |
|
|
| T |
2951601 |
ttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgt |
2951502 |
T |
|
| Q |
107 |
taagtttgcgaattttagaggggaccttgtagatgcaacagtca-ctgattgaaggtggctcagctccttcaagcatggcattgatatcatccaccaaac |
205 |
Q |
| |
|
| | ||||||| | |||||||||||||||||||||| ||| ||| |||||||||| | ||| | ||||| ||||||||||||| |||||| | |
|
|
| T |
2951501 |
tgtgcctgcgaataacataggggaccttgtagatgcaacactcatctg-ttgaaggtggatgtgctgtgtggagcatcgcattgatatcattcaccaagc |
2951403 |
T |
|
| Q |
206 |
cggataatgacatattgagagtcagcaagaaaatgaaaagcttggttgttggaatta |
262 |
Q |
| |
|
||| ||||||| || ||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2951402 |
aggaggatgacatcttcagagtcagcaagagaatgaaaagcttggtatttggaatta |
2951346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 2659416 - 2659559
Alignment:
| Q |
1 |
aaagctttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcat |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
2659416 |
aaagctttcaagtaaatgagtttgtgacgttccatgttttggagctgggggtgatcatggtgaaaggggccaatggaaacgagagtgggggtgtatgctt |
2659515 |
T |
|
| Q |
101 |
cttcgttaagtttgcgaattttagaggggaccttgtagatgcaa |
144 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
2659516 |
tttcgttgagtgtgcgaatagcagaggggaccttgtagatgcaa |
2659559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 2964149 - 2963887
Alignment:
| Q |
5 |
ctttgaagtaaatgagtttctgaggttccatgttttggagctggggttg------accatggtgaaaggggccaatggaaacgacagtgggggtgtatgc |
98 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| |||||| || ||| |||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
2964149 |
ctttgaagtaaatgagtttttgtcgttccatgttttggatctgggggtgggggtgaccgtggtgaaaggggccgatggaaacgaacttgggggtgtatgc |
2964050 |
T |
|
| Q |
99 |
atcttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcactgattgaaggtggctcagctccttcaagcatggcattgatatcatcc |
198 |
Q |
| |
|
| |||||| ||| ||||||| | |||||||||||||||||||||||| ||| | ||||||||||||| ||| || ||||||| |||||||||| |
|
|
| T |
2964049 |
gttttcgttgagtgtgcgaatatcagaggggaccttgtagatgcaacaatcataggttgaaggtggctctgctgtgtcgagcatggttttgatatcatta |
2963950 |
T |
|
| Q |
199 |
accaaaccggataatgacatattgaga-gtcagcaagaaaatgaaaagcttggttgttggaat |
260 |
Q |
| |
|
||||| | ||| |||||||| |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
2963949 |
accaagcgggagaatgacatcttgagaggtcagcaagaaaatgaaaagcttggtctttggaat |
2963887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 257 - 377
Target Start/End: Original strand, 2994197 - 2994316
Alignment:
| Q |
257 |
gaattaattgtggcaatggacaatatacaattgtctattaagcaataagagatttgaatttcggacttttgaaattaaatacaaagtcaaacttttaacg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
2994197 |
gaattaattgtggcaatggacaatatacaattgtctcttaagcaataagagatttgaa-ctccgactattgaaattaaatacaaaatcaaacttttaacg |
2994295 |
T |
|
| Q |
357 |
tatctcttagtttatatataa |
377 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
2994296 |
tatctcttagcttatatataa |
2994316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 92 - 248
Target Start/End: Complemental strand, 2929460 - 2929304
Alignment:
| Q |
92 |
tgtatgcatcttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcactgattgaaggtggctcagctccttcaagcatggcattgat |
191 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| | |||||||||||||| |
|
|
| T |
2929460 |
tgtatgcgtcttcgttgagtttgcgaattttagagggaaccttgtagatgcaacagtcatcagttgaaggtggctctgctgtgttgagcatggcattgat |
2929361 |
T |
|
| Q |
192 |
atcatccaccaaaccggataatgacatattgagagtcagcaagaaaatgaaaagctt |
248 |
Q |
| |
|
|||||||||||| | ||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2929360 |
atcatccaccaagcgggaggatgacatcttgagagttagcaagaaaatgaaaagctt |
2929304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 2982537 - 2982290
Alignment:
| Q |
1 |
aaagctttgaagtaaatgagtttctgaggttccatgttttggagctggggt------tgaccatggtgaaaggggccaatggaaacgacagtgggggtgt |
94 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2982537 |
aaagctttgaagtgaatgagcttctgacgttccatgttttggagatggaggcctaggtgaccgtggtgaaaggggccaatggaaacgacattgggggtgt |
2982438 |
T |
|
| Q |
95 |
atgcatcttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcactgattgaaggtggctcagctccttcaagcatggcattgatatc |
194 |
Q |
| |
|
|||| | |||||| | | ||||||| ||||||||||||||||||||||| ||| || ||| ||||||||| || | || ||||| |||||||| |
|
|
| T |
2982437 |
atgcgttttcgttgactgtgcgaataacagaggggaccttgtagatgcaacggtccttggttggaggtggctctgcgctgtcgagcatcgcattgat--- |
2982341 |
T |
|
| Q |
195 |
atccaccaaaccggataatgacatattgagagtcagcaagaaaatgaaaagcttggt |
251 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
2982340 |
atccaccaa---gg---atgacatcttgagagtcagcaaggaaatgaaaagcttggt |
2982290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 3338846 - 3338585
Alignment:
| Q |
1 |
aaagctttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| ||| ||| || ||| ||||||||||||||||||||||||| | ||||||||||| | |
|
|
| T |
3338846 |
aaagctttgaagtaaatgagtttgtgacgttccatgttttagagtcgggttttaccgtggtgaaaggggccaatggaaacgaacttaggggtgtatgcgt |
3338747 |
T |
|
| Q |
101 |
cttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcactgattgaaggtggctcagctccttcaagcatggcattgatatcatccac |
200 |
Q |
| |
|
|||| || |||||||||| |||||| || |||||||||||||||||| | ||||||||||||| | | || ||||| ||||||||||||||||| |
|
|
| T |
3338746 |
cttcattgtgtttgcgaataacagagggtactttgtagatgcaacagtcatcggttgaaggtggctctgatgtgtcgagcatcgcattgatatcatccac |
3338647 |
T |
|
| Q |
201 |
caaaccggataatgacatattgagagtcagcaagaaaatgaaaagcttggttgttggaatta |
262 |
Q |
| |
|
||| | ||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
3338646 |
caagcgggaggatgacatcttgagagtcagcaagaaaatgaaaaggttggtctttggaatta |
3338585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 35644 - 35784
Alignment:
| Q |
5 |
ctttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcatcttc |
104 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| | | ||||||||||| ||||| |
|
|
| T |
35644 |
ctttgaagtaaatgagtttgtgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaatggaaacgaaattaggggtgtatgcgtcttc |
35743 |
T |
|
| Q |
105 |
gttaagtttgcgaattttagaggggaccttgtagatgcaac |
145 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
35744 |
attgtgtttgcgaataacagaggggaccttgtagatgcaac |
35784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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