View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14702_low_13 (Length: 357)

Name: NF14702_low_13
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14702_low_13
NF14702_low_13
[»] chr5 (6 HSPs)
chr5 (1-357)||(41523920-41524276)
chr5 (1-355)||(41514969-41515323)
chr5 (230-329)||(41499389-41499488)
chr5 (256-327)||(41519327-41519398)
chr5 (106-181)||(41503473-41503548)
chr5 (230-329)||(41503582-41503681)


Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 41523920 - 41524276
Alignment:
Q  1 aaatcatcttcatctctgtcttcaatattagcagccacaggatcaacaggtgacttcccctcactattaccaccaccagagacacctacactcttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41523920 aaatcatcttcatctctgtcttcaatattagcagccacaggatcaacaggtgacttcccctcattattaccaccaccagagacacctacactcttcaaaa 41524019  T
Q  101 gattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccaagcaatatctcaatcttacgtttctcatcagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41524020 gattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccgagcaatatctcaatcttacgtttctcatcagc 41524119  T
Q  201 caacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41524120 caacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaaca 41524219  T
Q  301 tttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgcta 357  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41524220 tttttatcgccctccaatacacgaaccttattcctaagcgcatcaaaagcattgcta 41524276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 41514969 - 41515323
Alignment:
Q  1 aaatcatcttcatctctgtcttcaatattagcagccacaggatcaacaggtgacttcccctcactattaccaccaccagagacacctacactcttcaaaa 100  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  41514969 aaatcctcttcatctctgtcttcaatattagcagccataggatcaacatgtgacttcccctcattactaccaccaccagaggcacctacactcttcaaaa 41515068  T
Q  101 gattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccaagcaatatctcaatcttacgtttctcatcagc 200  Q
    | ||||||||||||||||| | |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41515069 gtttggtatcatcctccaaccccgaaagtcttccaagcagtcctttaaactttttgtacatagacccaagcaatatctcaatcttacgtttctcatcagc 41515168  T
Q  201 caacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaaca 300  Q
    |||||||||||||||||||||||||||| |||||||||||  |  |||||||||  ||||||||| |||||||||| |||||||||| ||||||||| ||    
T  41515169 caacttactcttttctttccccaacctacttatagtttccttatatttcttcactatttccttcaattcgccatttttaacctcaaccccagccaaagca 41515268  T
Q  301 tttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgc 355  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41515269 ttcttatcaccctccaatacacgaaccttatttctaagcgcatcaaaagcattgc 41515323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 329
Target Start/End: Original strand, 41499389 - 41499488
Alignment:
Q  230 ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt 329  Q
    |||||||||||||| | |||||||  |||||||||| ||| ||| ||  || || || |||||||||| |||| ||||||||||||| ||||||||||||    
T  41499389 ttatagtttccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagccaaatcattcttatcaccctccattacacgaacctt 41499488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 41519327 - 41519398
Alignment:
Q  256 gtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacc 327  Q
    |||||||||| |||||||||| ||| ||||| |||||||||| |||| || ||| |||||||||||| ||||    
T  41519327 gtttccttcaattcgccatttttaatctcaattccagccaaagcattcttttcaacctccaatacaccaacc 41519398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 41503473 - 41503548
Alignment:
Q  106 gtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccaagcaatatctcaa 181  Q
    |||||||||||||| || |||| |||||||  ||||||||| ||||| ||||| | ||||||||| ||||| ||||    
T  41503473 gtatcatcctccaaccttgaaactcttccagtcagtcctctgaactttttgtaaaaagacccaagtaatatatcaa 41503548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 329
Target Start/End: Original strand, 41503582 - 41503681
Alignment:
Q  230 ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt 329  Q
    |||||||||||||| | |||||||  |||||||||| ||| ||| || ||| || ||   |||||||| ||||||||||||||||||  ||| |||||||    
T  41503582 ttatagtttccaaattcttcttcattgtttccttcaattcaccagttttaatcttaaggtcagccaaatcatttttatcaccctccagaacatgaacctt 41503681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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