View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14702_low_15 (Length: 338)

Name: NF14702_low_15
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14702_low_15
NF14702_low_15
[»] chr8 (5 HSPs)
chr8 (166-324)||(26948183-26948341)
chr8 (93-169)||(26947295-26947371)
chr8 (93-169)||(26949618-26949694)
chr8 (18-84)||(26947177-26947243)
chr8 (24-84)||(26949496-26949556)
[»] chr7 (3 HSPs)
chr7 (93-169)||(5985197-5985273)
chr7 (93-169)||(8541876-8541952)
chr7 (18-84)||(8541995-8542061)
[»] scaffold0373 (1 HSPs)
scaffold0373 (97-169)||(14991-15063)
[»] chr4 (1 HSPs)
chr4 (97-169)||(6825210-6825282)
[»] chr6 (1 HSPs)
chr6 (93-172)||(13465288-13465367)
[»] chr5 (2 HSPs)
chr5 (181-241)||(20508014-20508074)
chr5 (125-169)||(20577379-20577423)
[»] chr1 (1 HSPs)
chr1 (18-84)||(40286038-40286104)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 166 - 324
Target Start/End: Original strand, 26948183 - 26948341
Alignment:
Q  166 tttcttagtttccaccatcacagtgcctttgcctttagattccacgactgagtcgtttcccagtcgaacctttactttgacagagtaatcgatatccttg 265  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  26948183 tttcttagtttccaccatcacagggcctttgcctttagattccatgactgagtcgtttcccagtcgaacctttactttgacaaagtaatcaatatccttg 26948282  T
Q  266 aagattctctcatctttggccatgtgattgctgcaaccactatccaagtatcaatttct 324  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26948283 aagatgctctcatctttggccatgtgattgctgcaaccactatccaagtaccaatttct 26948341  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 26947295 - 26947371
Alignment:
Q  93 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26947295 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatatttctttctagattcttcatgacatttc 26947371  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 26949618 - 26949694
Alignment:
Q  93 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  26949618 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttttagattcttcatgccatttc 26949694  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 26947177 - 26947243
Alignment:
Q  18 tgaaggaggctttagttgatggttgaaatgtagaagtaagtagtgcgaggatttgaagcaagaatag 84  Q
    ||||| |||||||||||||| |||||||| ||| ||||||||||| ||||| ||| |||||||||||    
T  26947177 tgaagaaggctttagttgatagttgaaatatagtagtaagtagtgtgaggacttggagcaagaatag 26947243  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 26949496 - 26949556
Alignment:
Q  24 aggctttagttgatggttgaaatgtagaagtaagtagtgcgaggatttgaagcaagaatag 84  Q
    |||||||||||||| |||||||| ||| ||||||||| | ||||| ||| |||| ||||||    
T  26949496 aggctttagttgatagttgaaatatagtagtaagtagcgtgaggacttggagcaggaatag 26949556  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 5985197 - 5985273
Alignment:
Q  93 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 169  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5985197 aatgagtacatgcttgcctatttaaagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 5985273  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 8541952 - 8541876
Alignment:
Q  93 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8541952 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctatatagttctttctagattcttcatgacatttc 8541876  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 8542061 - 8541995
Alignment:
Q  18 tgaaggaggctttagttgatggttgaaatgtagaagtaagtagtgcgaggatttgaagcaagaatag 84  Q
    ||||| |||||||||||||| |||||||| ||  ||||||||||| ||||| ||| |||||||||||    
T  8542061 tgaagaaggctttagttgatagttgaaatataatagtaagtagtgtgaggacttggagcaagaatag 8541995  T

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Target: scaffold0373 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 14991 - 15063
Alignment:
Q  97 agtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 169  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14991 agtacatgcttgcctatttatagtgtggatgtcatattctagatagttctttctagattcttcatgacatttc 15063  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 6825282 - 6825210
Alignment:
Q  97 agtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 169  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6825282 agtacatgcttgcctatttatagtgtggatgtcatattctagatagttctttctagattcttcatgacatttc 6825210  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 13465288 - 13465367
Alignment:
Q  93 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttctta 172  Q
    |||||||||||| |||||||||||||||||  || |||| |||||||   ||||||||||||||||||||||||||||||    
T  13465288 aatgagtacatgtttgcctatttatagtgtaaatatcatattctagaggcttctttctagattcttcatgacatttctta 13465367  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 20508014 - 20508074
Alignment:
Q  181 catcacagtgcctttgcctttagattccacgactgagtcgtttcccagtcgaacctttact 241  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  20508014 catcatagtgcctttgcctttagattcaacgactgagtcatttcctagtcgaacctttact 20508074  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 20577423 - 20577379
Alignment:
Q  125 atgtcatgttctagatagttctttctagattcttcatgacatttc 169  Q
    |||||||  ||||||||||||||||||| ||| ||||||||||||    
T  20577423 atgtcataatctagatagttctttctaggttcgtcatgacatttc 20577379  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 40286104 - 40286038
Alignment:
Q  18 tgaaggaggctttagttgatggttgaaatgtagaagtaagtagtgcgaggatttgaagcaagaatag 84  Q
    ||||| ||||||| |||||| |||||||| ||| ||||||||||| ||||| ||| |||||||||||    
T  40286104 tgaagaaggctttggttgatagttgaaatatagtagtaagtagtgtgaggacttggagcaagaatag 40286038  T

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