View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14702_low_21 (Length: 303)
Name: NF14702_low_21
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_low_21 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 2972665 - 2972372
Alignment:
| Q |
1 |
aaagctttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtat--gc |
98 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| | |||||||||||||||||||||||||| |||| |||||| || |
|
|
| T |
2972665 |
aaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggtttgaacgtggtgaaaggggccaatggaaacgactttgggagtgtatatgc |
2972566 |
T |
|
| Q |
99 |
atcttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgatatccacc |
198 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2972565 |
ctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgatatccacc |
2972466 |
T |
|
| Q |
199 |
aagcaggagagtgacatcttgagaggtgagcaagaaaatgaaaagctttggtctttggtctttggaattaggcttcaagaaaatgaaaagcttgg |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2972465 |
aagcaggagagtgacatcttgagaggtgagcaagaaaatgaaaagc-ttggtctttggtctttggaattaggtttcaagaaaatgaaaagcttgg |
2972372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 2997810 - 2998057
Alignment:
| Q |
1 |
aaagctttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2997810 |
aaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgt |
2997909 |
T |
|
| Q |
101 |
cttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgat---atccac |
197 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||| |||||| |
|
|
| T |
2997910 |
ctgcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctctgctccttcaagcatggcattgatatcatccac |
2998009 |
T |
|
| Q |
198 |
caagcaggagagtgacatcttgagaggtgagcaagaaaatgaaaagctt |
246 |
Q |
| |
|
||| ||| | |||||| |||||| || |||||||||||||||||||| |
|
|
| T |
2998010 |
caaatcggaaaatgacatattgaga-gtcagcaagaaaatgaaaagctt |
2998057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 2934258 - 2934017
Alignment:
| Q |
7 |
ttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcatcttcgt |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
2934258 |
ttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgt |
2934159 |
T |
|
| Q |
107 |
taagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgatatc---caccaagca |
203 |
Q |
| |
|
| || ||||||| | | |||||||| ||||||||||||||| |||||||||||| |||| || |||||||||| |||||||||| ||||||| |
|
|
| T |
2934158 |
tgtgtctgcgaataacataagggaccttatagatgcaacagtcatcggttgaaggtgactctgctttgtcgagcatggcattgatatcaataaccaagct |
2934059 |
T |
|
| Q |
204 |
ggagagtgacatcttgagaggtgagcaagaaaatgaaaagctt |
246 |
Q |
| |
|
|||||||||||| |||||| || |||||||||||||||||||| |
|
|
| T |
2934058 |
ggagagtgacatattgaga-gtcagcaagaaaatgaaaagctt |
2934017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 2659416 - 2659674
Alignment:
| Q |
1 |
aaagctttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcat |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
2659416 |
aaagctttcaagtaaatgagtttgtgacgttccatgttttggagctgggggtgatcatggtgaaaggggccaatggaaacgagagtgggggtgtatgctt |
2659515 |
T |
|
| Q |
101 |
cttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgatatccaccaa |
200 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||||||||||| || | |||| ||||||| | ||||||||| | |||||||||||||||| |
|
|
| T |
2659516 |
tttcgttgagtgtgcgaatagcagaggggaccttgtagatgcaaacaccaaccattgagaatggctctgcgctgtcgagcaacgcattgatatccaccaa |
2659615 |
T |
|
| Q |
201 |
gc---aggagagtgacatcttgagaggtgagcaagaaaatgaaaagctttggtctttgg |
256 |
Q |
| |
|
|| |||||| |||||||||||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
2659616 |
gcaggaggagaatgacatcttgagaggtcaacaagaaaatgaaaagctttggtcgttgg |
2659674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 2951601 - 2951360
Alignment:
| Q |
7 |
ttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcatcttcgt |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| || |
|
|
| T |
2951601 |
ttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgt |
2951502 |
T |
|
| Q |
107 |
taagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgatatc---caccaagca |
203 |
Q |
| |
|
| | ||||||| | |||||||||||||||||||||| ||| | ||||||||||| | | |||||| ||||||| |||||||||| ||||||||| |
|
|
| T |
2951501 |
tgtgcctgcgaataacataggggaccttgtagatgcaacactcatctgttgaaggtggatgtgctgtgtggagcatcgcattgatatcattcaccaagca |
2951402 |
T |
|
| Q |
204 |
ggagagtgacatcttgagaggtgagcaagaaaatgaaaagctt |
246 |
Q |
| |
|
|||| ||||||||| ||| || ||||||| |||||||||||| |
|
|
| T |
2951401 |
ggaggatgacatcttcaga-gtcagcaagagaatgaaaagctt |
2951360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 3004200 - 3004439
Alignment:
| Q |
7 |
ttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcatcttcgt |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
3004200 |
ttgaagtaaatgagtttctgattttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgt |
3004299 |
T |
|
| Q |
107 |
taagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgat---atccaccaagca |
203 |
Q |
| |
|
| || ||||||| | |||||||||||||||||||||| | | || ||||||||||| |||||| |||||| ||||||| ||||||||||| |
|
|
| T |
3004300 |
tgtgtctgcgaataacataggggaccttgtagatgcaacacttatcg---gaaggtggctcggctgtgttgagcatggcattgatatcatccaccaagct |
3004396 |
T |
|
| Q |
204 |
ggagagtgacatcttgagaggtgagcaagaaaatgaaaagcttt |
247 |
Q |
| |
|
||||| |||||| |||||| || ||||||||||||||||||||| |
|
|
| T |
3004397 |
ggagaatgacatattgaga-gttagcaagaaaatgaaaagcttt |
3004439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 2964149 - 2963890
Alignment:
| Q |
5 |
ctttgaagtaaatgagtttctgaggttccatgttttggagctggggttg------accatggtgaaaggggccaatggaaacgacagtgggggtgtatgc |
98 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| |||||| || ||| |||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
2964149 |
ctttgaagtaaatgagtttttgtcgttccatgttttggatctgggggtgggggtgaccgtggtgaaaggggccgatggaaacgaacttgggggtgtatgc |
2964050 |
T |
|
| Q |
99 |
atcttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgatatc---c |
195 |
Q |
| |
|
| |||||| ||| ||||||| | |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2964049 |
gttttcgttgagtgtgcgaatatcagaggggaccttgtagatgcaacaatcataggttgaaggtggctctgctgtgtcgagcatggttttgatatcatta |
2963950 |
T |
|
| Q |
196 |
accaagcaggagagtgacatcttgagaggtgagcaagaaaatgaaaagctttggtctttgg |
256 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
2963949 |
accaagcgggagaatgacatcttgagaggtcagcaagaaaatgaaaagc-ttggtctttgg |
2963890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 2926819 - 2926569
Alignment:
| Q |
7 |
ttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcatcttcgt |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||| || |
|
|
| T |
2926819 |
ttgaagtaaatgagtttctgactttccatgttttggagctggggttgaccgtggtgaaaggggccaatagaaacgaccttgggggtgtatgcgtctttgt |
2926720 |
T |
|
| Q |
107 |
taagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgatatc---caccaagca |
203 |
Q |
| |
|
| || ||||||| | |||||||||| ||||| ||||||||| |||||||||||| |||| |||||| |||||| ||||||||| || ||||| |
|
|
| T |
2926719 |
tgtgtctgcgaataacataggggaccttatagatacaacagtcatcggttgaaggtgactctgctgtgttgagcatggaattgatatccttcagcaagcg |
2926620 |
T |
|
| Q |
204 |
ggagagtgacatcttgagaggtgagcaagaaaatgaaaagctttggtctttgg |
256 |
Q |
| |
|
|||| ||||||||||||| || | |||||||||||||||| ||||||||||| |
|
|
| T |
2926619 |
ggaggatgacatcttgaga-gtcaccaagaaaatgaaaagc-ttggtctttgg |
2926569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 92 - 257
Target Start/End: Complemental strand, 2929460 - 2929293
Alignment:
| Q |
92 |
tgtatgcatcttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgat |
191 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
2929460 |
tgtatgcgtcttcgttgagtttgcgaattttagagggaaccttgtagatgcaacagtcatcagttgaaggtggctctgctgtgttgagcatggcattgat |
2929361 |
T |
|
| Q |
192 |
---atccaccaagcaggagagtgacatcttgagaggtgagcaagaaaatgaaaagctttggtctttggt |
257 |
Q |
| |
|
||||||||||| |||| ||||||||||||| || |||||||||||||||||||||| || ||||| |
|
|
| T |
2929360 |
atcatccaccaagcgggaggatgacatcttgaga-gttagcaagaaaatgaaaagctttgatcgttggt |
2929293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2982537 - 2982293
Alignment:
| Q |
1 |
aaagctttgaagtaaatgagtttctgaggttccatgttttggagctggggt------tgaccatggtgaaaggggccaatggaaacgacagtgggggtgt |
94 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2982537 |
aaagctttgaagtgaatgagcttctgacgttccatgttttggagatggaggcctaggtgaccgtggtgaaaggggccaatggaaacgacattgggggtgt |
2982438 |
T |
|
| Q |
95 |
atgcatcttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgatatc |
194 |
Q |
| |
|
|||| | |||||| | | ||||||| ||||||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||| |||||||||| |
|
|
| T |
2982437 |
atgcgttttcgttgactgtgcgaataacagaggggaccttgtagatgcaacggtccttggttggaggtggctctgcgctgtcgagcatcgcattgatatc |
2982338 |
T |
|
| Q |
195 |
caccaagcaggagagtgacatcttgagaggtgagcaagaaaatgaaaagctt |
246 |
Q |
| |
|
||||||| | ||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
2982337 |
caccaagga------tgacatcttgaga-gtcagcaaggaaatgaaaagctt |
2982293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 3338846 - 3338590
Alignment:
| Q |
1 |
aaagctttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| ||| ||| || ||| ||||||||||||||||||||||||| | ||||||||||| | |
|
|
| T |
3338846 |
aaagctttgaagtaaatgagtttgtgacgttccatgttttagagtcgggttttaccgtggtgaaaggggccaatggaaacgaacttaggggtgtatgcgt |
3338747 |
T |
|
| Q |
101 |
cttcgttaagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgat---atccac |
197 |
Q |
| |
|
|||| || |||||||||| |||||| || |||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
3338746 |
cttcattgtgtttgcgaataacagagggtactttgtagatgcaacagtcatcggttgaaggtggctctgatgtgtcgagcatcgcattgatatcatccac |
3338647 |
T |
|
| Q |
198 |
caagcaggagagtgacatcttgagaggtgagcaagaaaatgaaaagctttggtctttgg |
256 |
Q |
| |
|
||||| |||| ||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
3338646 |
caagcgggaggatgacatcttgaga-gtcagcaagaaaatgaaaag-gttggtctttgg |
3338590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 35644 - 35833
Alignment:
| Q |
5 |
ctttgaagtaaatgagtttctgaggttccatgttttggagctggggttgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcatcttc |
104 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| | | ||||||||||| ||||| |
|
|
| T |
35644 |
ctttgaagtaaatgagtttgtgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaatggaaacgaaattaggggtgtatgcgtcttc |
35743 |
T |
|
| Q |
105 |
gttaagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgatatc |
194 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||| | | |||||||||||| ||| |||||| |||||||||||| ||||| |
|
|
| T |
35744 |
attgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcggttgaaggtgcatctgctgtgtggagcatcacattcatatc |
35833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University