View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14702_low_24 (Length: 301)
Name: NF14702_low_24
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 53 - 288
Target Start/End: Complemental strand, 7534768 - 7534527
Alignment:
| Q |
53 |
tttccgttgtaaattagagaagtattaattaactgatttggagtgaacaatttgaaaaagcaggagtaggtaacatcgttggcatactcaaaatgagttc |
152 |
Q |
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| T |
7534768 |
tttccgttgtaaattagagaagtattaattaactgatttggagtgaacaatttgaaaaagcaggagtaggtaacatcgttggcatactcaaaatgagttc |
7534669 |
T |
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| Q |
153 |
aaaagaaagttgcagaagcgaacttcgcatcgcaattcgtcaactcacagatcgttgtctctattcctcctccaaatggtagtagttcttaacttcaaat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
7534668 |
aaaagaaagttgcagaagcgaacttcgcatcgcaattcgtcaactcacagatcgttgtctctattcttcttccaaatggtagtagttcttaacttcaaat |
7534569 |
T |
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| Q |
253 |
ctctactt------acacagacatgtcgacacaagtaaatga |
288 |
Q |
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| T |
7534568 |
ctctaattacattgacacagacacgtcgacacaagtaaatga |
7534527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 46965171 - 46965083
Alignment:
| Q |
145 |
atgagttcaaaagaaagttgcagaagcgaacttcgcatcgcaattcgtcaactcacagatcgttgtctctattcctcctccaaatggta |
233 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
46965171 |
atgagttcgaaagaaagttgcagaagcgaacttcgcatcgcaattcgtcaactcagcaatcgttgtctctattccgcttccaaatggta |
46965083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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