View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14702_low_3 (Length: 662)
Name: NF14702_low_3
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_low_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 12 - 646
Target Start/End: Original strand, 1875360 - 1875994
Alignment:
| Q |
12 |
cataggtgttgtaacagtgaagaaagtggtgnnnnnnngaagactagtagagtgaaaaagattgttttttcacttccttctgcttttgtaatctttgttt |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1875360 |
cataggtgttgtaatagtgaagaaagtggtgaaaaaaagaggacaagtagagtgaaaaagattcttttttcacttccttctgcttttgtaatctttgttt |
1875459 |
T |
|
| Q |
112 |
taggtgttattttggcattcataaaaaggcctaatgtggtgcatgaaattaagtttggaccctcttcaatagaagtggtgaaattcactaaacatgcttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1875460 |
taggtgttattttggcattcataaaaaggcctaatgtggtgcatgaaattaagtttggaccctcttcaatagaagtggtgaaattcactaaacatgcttg |
1875559 |
T |
|
| Q |
212 |
gaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaatcttgaactctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1875560 |
gaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaatcttgaactctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaa |
1875659 |
T |
|
| Q |
312 |
aaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggac |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1875660 |
aaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggac |
1875759 |
T |
|
| Q |
412 |
tagcaggacagtataaatttggtggaaggagtggagggtgtgtggcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1875760 |
tagcaggacagtataaatttggtggaaggagtggagggtgtgtggcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggc |
1875859 |
T |
|
| Q |
512 |
acacattttaatgcagtttccagttgggattttaggtgttttgcttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaa |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1875860 |
acacattttaatgcagtttccagttgggattttaggtgttttgcttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaa |
1875959 |
T |
|
| Q |
612 |
gattcctttgtggcacttatttgcactgctgtttc |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
1875960 |
gattcctttgtggcacttatttgcactgctgtttc |
1875994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 68 - 646
Target Start/End: Original strand, 1807812 - 1808390
Alignment:
| Q |
68 |
aaagattgttttttcacttccttctgcttttgtaatctttgttttaggtgttattttggcattcataaaaaggcctaatgtggtgcatgaaattaagttt |
167 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||| || || | |||||| || |||| ||| | | || |||||||||||||| ||| |
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|
| T |
1807812 |
aaagattattttttcacttccttctgcttttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagttgtgcatgaaattaaattt |
1807911 |
T |
|
| Q |
168 |
ggaccctcttcaatagaagtggtgaaattcactaaacatgcttggaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaatcttgaact |
267 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| | |||||||||||||||||| |||||| ||||||| |||||||| ||| |||| ||||||| |
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|
| T |
1807912 |
ggaccctctaaaatagaagtaatgaaattcactaaagaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaact |
1808011 |
T |
|
| Q |
268 |
ctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggttgg |
367 |
Q |
| |
|
| ||||||||||||||||| || |||| ||| | || ||||||| ||| |||||||| || ||| |||||||||||||||| | |||||||| ||||| |
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|
| T |
1808012 |
cagtgatagctgtttgtaaattatcaacagatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaatttagttgg |
1808111 |
T |
|
| Q |
368 |
ttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaaggagtggagggtgtgtggcacttcttggt |
467 |
Q |
| |
|
|| |||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
1808112 |
ttcttggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttggaggaaggagtggagggtgtgttgcacttcttggt |
1808211 |
T |
|
| Q |
468 |
gttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtgttttgcttttgtttgctg |
567 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
1808212 |
tttgcaaaattggtattgggattggttttaggaacttctttggcacacattttgcaacaatttccagttgggattttaggtgtgttacttttgtttgctg |
1808311 |
T |
|
| Q |
568 |
gtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttc |
646 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1808312 |
gtattgaacttgctatgtgtgctagggatatgaatagtaaagaagattcttttgtggcacttatttgcactgctgtttc |
1808390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 59 - 646
Target Start/End: Complemental strand, 25798409 - 25797822
Alignment:
| Q |
59 |
tagagtgaaaaagattgttttttcacttccttctgcttttgtaatctttgttttaggtgttattttggcattcataaaaaggcctaatgtggtgcatgaa |
158 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||||| |||||| ||||||| || || || |||||| || |||| || | | | || || ||||| |
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|
| T |
25798409 |
tagattgagaaagattattttttcacttccttctgcatttgtagtctttgtgttggggattgttttggtttttataagaaaacatgaagttgtcaatgaa |
25798310 |
T |
|
| Q |
159 |
attaagtttggaccctcttcaatagaagtggtgaaattcactaaacatgcttggaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaa |
258 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| ||| ||| |
|
|
| T |
25798309 |
attaaatttggaccaacttcaatagaattggtgaaattcactaaacatgcatggaagaaaggttttgtcaaaggtgcaattcctcaacttccattgtcaa |
25798210 |
T |
|
| Q |
259 |
tcttgaactctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttgatgaa |
358 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |||| ||| | ||||| |||||||| |||||||| |||||| |||||||||||||||| | ||||| |
|
|
| T |
25798209 |
ttttgaactctgtcatagctgtttgtaagttatcaacagatctttttccagaaaaggaattttcagttacttcaatttcagtgacagttggactaatgaa |
25798110 |
T |
|
| Q |
359 |
tttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaaggagtggagggtgtgtggca |
458 |
Q |
| |
|
|||| | ||||||||||||||| ||||| |||| |||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25798109 |
tttgatcggttgttggtttggttgtgtgccaacttgtcatggtgccggtggactcgcaggacaatataaatttggtggaagaagtggagggtgtgtggca |
25798010 |
T |
|
| Q |
459 |
cttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtgttttgcttt |
558 |
Q |
| |
|
|||||||||| | |||||||||||| |||||| |||| |||||||| |||||| ||||||||| | |||||| || ||||| ||||| || ||||||| |
|
|
| T |
25798009 |
cttcttggtgcaggaaaattggtattaggattgttgttgggaacttccttggcaaacattttaaagatgtttccggtcgggatcttaggagtgttgcttt |
25797910 |
T |
|
| Q |
559 |
tgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttc |
646 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
25797909 |
tgtttgctggaattgaacttgctatgtgtgctagagacatgaatagcaaagaagatttctttgtggctcttatttccactgctgtttc |
25797822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 66 - 647
Target Start/End: Complemental strand, 49993559 - 49992978
Alignment:
| Q |
66 |
aaaaagattgttttttcacttccttctgcttttgtaatctttgttttaggtgttattttggcattcataaaaaggcctaatgtggtgcatgaaattaagt |
165 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || | |||||||| ||||| ||||||| || |||| ||||||||||||| | ||||||||||| | |
|
|
| T |
49993559 |
aaaaagattgttttttcactaccttctgcttttatagtatttgttttgggtgtgattttgggttttataagaaggcctaatgtgatacatgaaattaaat |
49993460 |
T |
|
| Q |
166 |
ttggaccctcttcaatagaagtggtgaaattcactaaacatgcttggaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaatcttgaa |
265 |
Q |
| |
|
||||||| ||| ||||| | |||||||| |||||||||| ||||| |||||||||| || ||||| ||||| ||||| || ||| |||| ||||| |
|
|
| T |
49993459 |
ttggaccttctaatatagagttagtgaaattttctaaacatgcatggaaacaaggttttataaagggtactattccacaactacccttgtcaattttgaa |
49993360 |
T |
|
| Q |
266 |
ctctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggtt |
365 |
Q |
| |
|
||| |||||||||||||| || | || ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||| | | |
|
|
| T |
49993359 |
ctcggtgatagctgtttgcaaactatcctctgatttatttccaaccaaggacttttcagtaacttcactttcagtgacagttgggttaatgaatcttttg |
49993260 |
T |
|
| Q |
366 |
ggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaaggagtggagggtgtgtggcacttcttg |
465 |
Q |
| |
|
||| ||||||||||||| ||||||| || ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
49993259 |
ggtggttggtttggtgctatgccatgctgtcatggtgctggaggattagcaggacagtataaatttggtgggaggagtggagggtgtgtggcaattcttg |
49993160 |
T |
|
| Q |
466 |
gtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtgttttgcttttgtttgc |
565 |
Q |
| |
|
||| |||||||||||| ||||| || || || |||| ||| ||||| || |||| | |||||||| || || |||||||| || ||| | |||||||| |
|
|
| T |
49993159 |
gtgctgcaaaattggttttgggttttgttttgggaagttcattggctcattttttcaaacagtttcctgtgggaattttaggggtgttgttgttgtttgc |
49993060 |
T |
|
| Q |
566 |
tggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttct |
647 |
Q |
| |
|
||| ||||| | |||||| | |||||||||||||| |||||| ||||| ||||| ||| |||| |||||||||||| |
|
|
| T |
49993059 |
tgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttttgttatgcttctttgtactgctgtttct |
49992978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 445
Target Start/End: Original strand, 2862147 - 2862258
Alignment:
| Q |
334 |
tttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttgg |
433 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| | ||||||||| ||||||||| | || || ||||||| ||||| |
|
|
| T |
2862147 |
tttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtttgg |
2862246 |
T |
|
| Q |
434 |
tggaaggagtgg |
445 |
Q |
| |
|
|| |||||||| |
|
|
| T |
2862247 |
aggtaggagtgg |
2862258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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