View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14702_low_32 (Length: 243)
Name: NF14702_low_32
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 53071445 - 53071652
Alignment:
| Q |
19 |
ttaaggccatcactccatgcaaaaccttgtgctgatgaaaccattgccatgtccacttcatacttaacattcttaatattttcctttgaagaaatattat |
118 |
Q |
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| T |
53071445 |
ttaaggccatcactccatgcaaaaccttgtgctgatgaaaccattgccatgtccacttcatacttaacattcttaatattttcctttgaagaaatattat |
53071544 |
T |
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| Q |
119 |
tttcctttatcttcatcaatgctggaactaaataacttaaatagtttctagcaaatatagtttggactattgtgtttggttccacagaataaacacgtct |
218 |
Q |
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| T |
53071545 |
tttcctttatcttcatcaatgctggaactaaataacttaaatagtttctagcaaatatagtttgcactattgtgtttggttccacagaataaacacgtct |
53071644 |
T |
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| Q |
219 |
acgtttat |
226 |
Q |
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|||||||| |
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| T |
53071645 |
acgtttat |
53071652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 35032606 - 35032798
Alignment:
| Q |
33 |
ccatgcaaaaccttgtgctgatgaaaccattgccatgtccacttcatacttaacattcttaatat------------tttcctttgaagaaatattattt |
120 |
Q |
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| T |
35032606 |
ccatgcaaaatcttgtgctgagaaaaccatcgcgatgtccacttcatacttaacattcttaatatggttgctattgttatcctttgaagaattattattt |
35032705 |
T |
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| Q |
121 |
tcctttatcttcatcaatgctggaactaaataacttaaatagtttctagcaaatatagtttggactattgtgtttggttccacagaataaaca |
213 |
Q |
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| T |
35032706 |
tcctttatcttcgtcaatgttagatctaaataacttaaatagtttctagcaaatatagtttgcactattttgtttagttccacataataaaca |
35032798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 15883169 - 15883116
Alignment:
| Q |
30 |
actccatgcaaaaccttgtgctgatgaaaccattgccatgtccacttcatactt |
83 |
Q |
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|||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
15883169 |
actccatgcaaaaccttgagatgaaaaaaccattgccatgtccacttcatactt |
15883116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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