View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14702_low_37 (Length: 229)
Name: NF14702_low_37
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_low_37 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 11320057 - 11320264
Alignment:
| Q |
22 |
cacaacaacaattccccgtgatgccacgtaggcgttccattctcatacgcattacatgtcagtctcctcaacccactcccatccaacttcaccacaaaca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
11320057 |
cacaacaacaattccccgtgatgccacgtaggcgttccattctcatacgcattacatgtcagcctcctcaacccactcccgtccaacttcaccacaaaca |
11320156 |
T |
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| Q |
122 |
aatccccatatggctgaaactgattcggcaaccccaccggctccgctgacacaccacccaaattggccgtaaacaacaaccactcaccatcgctactaaa |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
11320157 |
aatccccatatggctgaaactgattcggcaaccccaccggctctgctgacacaccacccaaattggccgtaaacaacaaccactcaccgtcgccactaaa |
11320256 |
T |
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| Q |
222 |
acaaacat |
229 |
Q |
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|||||||| |
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| T |
11320257 |
acaaacat |
11320264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 11478078 - 11478285
Alignment:
| Q |
22 |
cacaacaacaattccccgtgatgccacgtaggcgttccattctcatacgcattacatgtcagtctcctcaacccactcccatccaacttcaccacaaaca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
11478078 |
cacaacaacaattccccgtgatgccacgtaggcgttccattctcatacgcattacatgtcagcctcctcaacccactcccgtccaacttcaccacaaaca |
11478177 |
T |
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| Q |
122 |
aatccccatatggctgaaactgattcggcaaccccaccggctccgctgacacaccacccaaattggccgtaaacaacaaccactcaccatcgctactaaa |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
11478178 |
aatccccatatggctgaaactgattcggcaaccccaccggctctgctgacacaccacccaaattggccgtaaacaacaaccactcaccgtcgccactaaa |
11478277 |
T |
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| Q |
222 |
acaaacat |
229 |
Q |
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|||||||| |
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| T |
11478278 |
acaaacat |
11478285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 11458664 - 11458870
Alignment:
| Q |
23 |
acaacaacaattccccgtgatgccacgtaggcgttccattctcatacgcattacatgtcagtctcctcaacccactcccatccaacttcaccacaaacaa |
122 |
Q |
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|||||||||| ||||| | |||||||| || |||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |
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| T |
11458664 |
acaacaacaaatccccataatgccacgccggtgttccattttcatacgcattacatgtcagcctcctcaatccactcccatccaatttcaccacaaacaa |
11458763 |
T |
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| Q |
123 |
atccccatatggctgaaactgattcggcaaccccaccggctccgctgacacaccacccaaattggccgtaaacaacaaccactcaccatcgctactaaaa |
222 |
Q |
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||| |||||||| ||| ||||||| || | | | ||||||| || | || |||| ||||||| | ||||||||||||||||| ||||| | ||||||| |
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| T |
11458764 |
atctccatatggttgatactgatttggtatcgacgccggctctgccgtcagaccaaccaaattaccggtaaacaacaaccactccccatcaccactaaaa |
11458863 |
T |
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| Q |
223 |
caaacat |
229 |
Q |
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| ||||| |
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| T |
11458864 |
cgaacat |
11458870 |
T |
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