View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14702_low_38 (Length: 221)

Name: NF14702_low_38
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14702_low_38
NF14702_low_38
[»] chr2 (6 HSPs)
chr2 (14-199)||(9428962-9429146)
chr2 (86-184)||(5539892-5539990)
chr2 (79-184)||(32487325-32487430)
chr2 (85-180)||(34664777-34664872)
chr2 (72-199)||(37983544-37983671)
chr2 (82-167)||(3156608-3156693)
[»] chr4 (3 HSPs)
chr4 (72-182)||(27552443-27552553)
chr4 (88-184)||(6510518-6510614)
chr4 (103-185)||(41482055-41482137)
[»] chr5 (2 HSPs)
chr5 (105-184)||(9595058-9595137)
chr5 (85-182)||(28569804-28569901)
[»] chr8 (2 HSPs)
chr8 (82-199)||(43799560-43799679)
chr8 (85-182)||(25721209-25721306)
[»] chr6 (4 HSPs)
chr6 (85-170)||(12691904-12691989)
chr6 (84-199)||(2820836-2820951)
chr6 (85-184)||(13094877-13094976)
chr6 (72-184)||(14392265-14392377)
[»] chr1 (3 HSPs)
chr1 (72-184)||(24662588-24662700)
chr1 (101-199)||(16587610-16587708)
chr1 (85-128)||(22228691-22228734)
[»] chr3 (2 HSPs)
chr3 (85-184)||(32516689-32516788)
chr3 (148-184)||(15266645-15266681)
[»] scaffold1185 (1 HSPs)
scaffold1185 (87-184)||(2047-2144)
[»] chr7 (1 HSPs)
chr7 (100-184)||(26159697-26159781)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 9429146 - 9428962
Alignment:
Q  14 aatatttacaacaataaggtgttgtacttaagaaagcaccaacnnnnnnnnnnnnnnnttacacctggactcccatacaaggaagtggatgtttccaccc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||               ||||||||| ||||||||||||||||||||||||||||||||    
T  9429146 aatatttacaacaataaggtgttgtacttaagaaagcaccaacaaaaaggaaaaaag-ttacacctgaactcccatacaaggaagtggatgtttccaccc 9429048  T
Q  114 gtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaactttttgagttacaatagaag 199  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  9429047 gtcatgataactatagcgaaaagatgcatgtgttgatttcagccataagaaagaatttagtttaactttttgagctagaatagaag 9428962  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 5539990 - 5539892
Alignment:
Q  86 ccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaacttttt 184  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||| ||| ||  | ||| ||||||||| |||||||||  ||||| | ||||||||||    
T  5539990 ccatacaaagaagcggatgtttccaccagtcatgataattatagctaaaggacacctgttttgatttcaaccacaagaataaatttggcttaacttttt 5539892  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 32487325 - 32487430
Alignment:
Q  79 tggactcccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaa 178  Q
    ||||| |||||||||   || |||||||| ||||  ||||||||| | |||  ||| ||  ||||| ||||||||||||||||||| |||||||| ||||    
T  32487325 tggacacccatacaaatgagcggatgtttgcaccaatcatgataactgtagttaaatgacacatgttttgatttcagccacaagaatgaatttagcttaa 32487424  T
Q  179 cttttt 184  Q
    ||||||    
T  32487425 cttttt 32487430  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 34664777 - 34664872
Alignment:
Q  85 cccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaact 180  Q
    |||||||||| || ||||| |||||| |  ||||||||| |||||| ||||||||  ||   || ||| ||||||||||||||||||| |||||||    
T  34664777 cccatacaagaaattggatttttccatcattcatgataactatagctaaaagatgtctgaaatgcttttagccacaagaaagaatttaatttaact 34664872  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 37983544 - 37983671
Alignment:
Q  72 ttacacctggactcccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaattt 171  Q
    |||||| ||||| | ||||||| | || |||||||||||||  ||||||||| |||||| ||| |  || | | ||||||||| |||||||||||| ||     
T  37983544 ttacacgtggacactcatacaaaggagaggatgtttccaccaatcatgataactatagctaaatgtcgcctattttgatttcaaccacaagaaagagttc 37983643  T
Q  172 agtttaactttttgagttacaatagaag 199  Q
    | |||||| |||| | ||| ||||||||    
T  37983644 aatttaaccttttcaattagaatagaag 37983671  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 3156693 - 3156608
Alignment:
Q  82 actcccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaaga 167  Q
    |||| ||||||  ||||||||||||||||||  | |||| || |||||| ||| |  |||||| | ||||||||||||||||||||    
T  3156693 actctcatacacagaagtggatgtttccaccaattatgaaaactatagctaaaggcggcatgtttagatttcagccacaagaaaga 3156608  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 27552553 - 27552443
Alignment:
Q  72 ttacacctggactcccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaattt 171  Q
    ||||||||||||||||||||||||||| || ||||||||||  |||||||||||||| | |||     |||||| ||||||||||||||| ||| |||||    
T  27552553 ttacacctggactcccatacaaggaagcgggtgtttccaccaatcatgataattataactaaacagcacatgtgatgatttcagccacaaaaaataattt 27552454  T
Q  172 agtttaacttt 182  Q
    |||||||||||    
T  27552453 agtttaacttt 27552443  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 6510518 - 6510614
Alignment:
Q  88 atacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaacttttt 184  Q
    |||||||| |||| || |||||||| |||||||||| |||||| ||||||||  | ||||||||||| |||||||||| |||||| |||||| ||||    
T  6510518 atacaaggtagtgaatttttccaccagtcatgataactatagctaaaagatgtctctgttgatttcaaccacaagaaataatttaatttaacctttt 6510614  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 41482055 - 41482137
Alignment:
Q  103 tgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaactttttg 185  Q
    ||||||||||  ||||||||| | || | ||||  ||||||| ||||||||||||| |  ||||||||||| |||||||||||    
T  41482055 tgtttccaccaatcatgataactgtaactaaaaattgcatgttttgatttcagccaaagaaaagaatttagcttaactttttg 41482137  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 9595137 - 9595058
Alignment:
Q  105 tttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaacttttt 184  Q
    ||||||||  ||||||||| |||||| ||||||||  |||||||||||||||||||||||| ||||||||||||||||||    
T  9595137 tttccaccaatcatgataactatagctaaaagatgtctgtgttgatttcagccacaagaaataatttagtttaacttttt 9595058  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 28569804 - 28569901
Alignment:
Q  85 cccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaacttt 182  Q
    ||||||||| | ||| |||||||||||| |||||||||| |||||| ||| ||||| |||| |||||||||| |||  ||||||||||||||||||||    
T  28569804 cccatacaaaggagttgatgtttccaccagtcatgataactatagctaaatgatgcctgtgatgatttcagcaacataaaagaatttagtttaacttt 28569901  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 43799560 - 43799679
Alignment:
Q  82 actcccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaaga--tgcatgtgttgatttcagccacaagaaagaatttagtttaac 179  Q
    |||| ||||||||| ||| ||||||||||||||||||| ||| |||||| ||||||  ||| ||| | |||||||||||||||||| |||| | ||||||    
T  43799560 actctcatacaagggagtagatgtttccacccgtcatggtaactatagctaaaagagttgcttgtttagatttcagccacaagaaataattcattttaac 43799659  T
Q  180 tttttgagttacaatagaag 199  Q
    ||||| || || ||||||||    
T  43799660 tttttcagctagaatagaag 43799679  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 25721306 - 25721209
Alignment:
Q  85 cccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaacttt 182  Q
    |||||||| || |||||||||||||||| |||||||||| |||||| ||| ||||  ||| ||||||||| |||||  ||||||| || |||||||||    
T  25721306 cccatacatgggagtggatgtttccaccagtcatgataagtatagctaaatgatggttgtattgatttcaaccacataaaagaatctaatttaacttt 25721209  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 12691904 - 12691989
Alignment:
Q  85 cccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatt 170  Q
    ||||||||| | |||||||||||||||| |||||||||| |||||| ||||| ||  ||| | |||||||||||||||||||||||    
T  12691904 cccatacaaaggagtggatgtttccaccggtcatgataactatagctaaaagttgtctgtttagatttcagccacaagaaagaatt 12691989  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 2820836 - 2820951
Alignment:
Q  84 tcccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaactttt 183  Q
    ||||||| ||| |||||| |||||||||| |||||||||| |||||| ||||| ||  | ||  ||||||||||||||||||||||  | ||||||||||    
T  2820836 tcccatataagaaagtgggtgtttccacctgtcatgataactatagctaaaagttgtctctgaagatttcagccacaagaaagaatccaatttaactttt 2820935  T
Q  184 tgagttacaatagaag 199  Q
    | || || ||||||||    
T  2820936 ttagctagaatagaag 2820951  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 13094877 - 13094976
Alignment:
Q  85 cccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaacttttt 184  Q
    ||||| ||||| ||| |||||||||||| ||||||||||| |||   ||||||||  |||| |||||||||||||| |||||||||||| || |||||||    
T  13094877 cccatgcaagggagtagatgtttccaccagtcatgataatcatatataaaagatgtctgtgatgatttcagccacatgaaagaatttagattcacttttt 13094976  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 14392265 - 14392377
Alignment:
Q  72 ttacacctggactcccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaattt 171  Q
    |||||| ||||| | ||||||| | || | |||||||||||  ||||||||| |||||| |||||   ||||| || ||||||||| |||||| || |||    
T  14392265 ttacacgtggacactcatacaaaggagagaatgtttccaccgttcatgataactatagctaaaagtcacatgttttaatttcagccgcaagaatgagttt 14392364  T
Q  172 agtttaacttttt 184  Q
    |||||||||||||    
T  14392365 agtttaacttttt 14392377  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 24662700 - 24662588
Alignment:
Q  72 ttacacctggactcccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaattt 171  Q
    ||||||||| ||||||||||||||| | |  |||||||| ||||||| |||| |||| | |||  | |  |||| ||||||||||||||||||||| |||    
T  24662700 ttacacctgaactcccatacaaggacgcgagtgtttccagccgtcataataactataactaaacaacgtttgtgatgatttcagccacaagaaagatttt 24662601  T
Q  172 agtttaacttttt 184  Q
    |||||||||||||    
T  24662600 agtttaacttttt 24662588  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 16587708 - 16587610
Alignment:
Q  101 gatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaactttttgagttacaatagaag 199  Q
    |||||||||||| ||| ||||||||||||| ||||| ||  ||| | |||||||||||||||||| |||| ||||||| ||||| || || ||||||||    
T  16587708 gatgtttccaccagtcgtgataattatagctaaaagttgtctgtttagatttcagccacaagaaataattcagtttaattttttcagctagaatagaag 16587610  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 22228691 - 22228734
Alignment:
Q  85 cccatacaaggaagtggatgtttccacccgtcatgataattata 128  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||    
T  22228691 cccatacaagggagtggatgcttccaccagtcatgataattata 22228734  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 32516689 - 32516788
Alignment:
Q  85 cccatacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaacttttt 184  Q
    ||||||||||| ||||||||||| |||| ||||||||||| |||   ||||||||   ||| ||| |||||||||| ||||||||||||||| |||||||    
T  32516689 cccatacaagggagtggatgttttcaccagtcatgataatcatatataaaagatgtcagtgatgacttcagccacatgaaagaatttagtttcacttttt 32516788  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 15266681 - 15266645
Alignment:
Q  148 gatttcagccacaagaaagaatttagtttaacttttt 184  Q
    |||||||||||||| |||||||| |||||||||||||    
T  15266681 gatttcagccacaaaaaagaattaagtttaacttttt 15266645  T

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Target: scaffold1185 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 2144 - 2047
Alignment:
Q  87 catacaaggaagtggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaacttttt 184  Q
    ||||||| | || |||||||||||||  ||||||||| |||||| |||||    |||| ||||||||||||||||||| || ||||||||||||||||    
T  2144 catacaaaggagaggatgtttccaccattcatgataagtatagctaaaagtcatatgttttgatttcagccacaagaatgagtttagtttaacttttt 2047  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 26159781 - 26159697
Alignment:
Q  100 ggatgtttccacccgtcatgataattatagcgaaaagatgcatgtgttgatttcagccacaagaaagaatttagtttaacttttt 184  Q
    ||||||||||||| |||||||||| |||| | ||| ||  |||||  |||||||| ||||||||| |||||||| ||||||||||    
T  26159781 ggatgtttccaccagtcatgataactataactaaatgacacatgttatgatttcaaccacaagaatgaatttagcttaacttttt 26159697  T

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