View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14702_low_41 (Length: 202)
Name: NF14702_low_41
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 15725759 - 15725927
Alignment:
| Q |
17 |
cacagaagatggaactgttgatcttaaagggaaacctattctcaaatccaaaactggttgttggaaagcttgttccttctttgttggtatgcta-tttcc |
115 |
Q |
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| T |
15725759 |
cacacaagatggaactgttgatcttaaagggaaacctattctcaaatccaaaactggttgttggaaagcttgttcattctttgttggtatgctattttcc |
15725858 |
T |
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| Q |
116 |
tcttgctctctcatatatcctcatttttgtttgttcaaataataaatgttgttaaaatgattctgattc |
184 |
Q |
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| T |
15725859 |
tcttgctctctcatatatgctcatttttgtttgttgaaataataaatgttgttaaaatgattccgattc |
15725927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 15733810 - 15733946
Alignment:
| Q |
17 |
cacagaagatggaactgttgatcttaaagggaaacctattctcaaatccaaaactggttgttggaaagcttgttccttctttgttggtatgctatttcct |
116 |
Q |
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| T |
15733810 |
cacagaagatggaactgttgatcttaaagggaaacctattctcaaatctaaaactggttgttggaaagcttgttccttctttgttggtatgccattttct |
15733909 |
T |
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| Q |
117 |
cttgctctctcatatatcctcatttttgtttgttcaa |
153 |
Q |
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| T |
15733910 |
cttgctctctcatgtatgctcatttttgtttgttcaa |
15733946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 33417225 - 33417137
Alignment:
| Q |
17 |
cacagaagatggaactgttgatcttaaagggaaacctattctcaaatccaaaactggttgttggaaagcttgttccttctttgttggta |
105 |
Q |
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| T |
33417225 |
cacagaagatggaactgtgaatcttaaagggaaacctgttcttagatccaaaactggtggttggaaagcttgttcctttgttgttggta |
33417137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 15774942 - 15775030
Alignment:
| Q |
17 |
cacagaagatggaactgttgatcttaaagggaaacctattctcaaatccaaaactggttgttggaaagcttgttccttctttgttggta |
105 |
Q |
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| T |
15774942 |
cacacaagatggaactgttgatcttaaaggaaaacctgttctcagatcaaaaacaggtggctggaaagcttgctccttccttgttggta |
15775030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 15761643 - 15761732
Alignment:
| Q |
17 |
cacagaagatggaactgttgatcttaaagggaaacctattctcaaatccaaaactggttgttggaaagcttgttccttctttgttggtat |
106 |
Q |
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| T |
15761643 |
cacacaagatgggactattgatcttaatggaaaacctgttctaagatccaagacaggtcgttggaaagcttgctcattccttgttggtat |
15761732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 15753053 - 15753141
Alignment:
| Q |
17 |
cacagaagatggaactgttgatcttaaagggaaacctattctcaaatccaaaactggttgttggaaagcttgttccttctttgttggta |
105 |
Q |
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| T |
15753053 |
cacaaaagatggaactattgatcttaaaggaaattctgttctcagatccaagacaggtggttggaaagcttgctcatttcttgttggta |
15753141 |
T |
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