View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14702_low_5 (Length: 585)
Name: NF14702_low_5
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 299
Target Start/End: Original strand, 28168118 - 28168411
Alignment:
| Q |
7 |
atactcgaaaataatgagaggtccaataatacgaatggtatttgttaatgatgcaacaagttgcaaataagtgaatttagcttaggatgctacctcattg |
106 |
Q |
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| T |
28168118 |
atactcgaaaataatgagaggtccaataatacgaatggtatttgttaatgatgcaacaagttgcaaataagtgaatttagcttaggatgctacctcattg |
28168217 |
T |
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| Q |
107 |
ttacatggaaaacctgcatgaagaattgcaaggtgtgtttaatgatgttaataataataacatatgtgaagcttgtcaactaatagctactaagtctaat |
206 |
Q |
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| T |
28168218 |
ttacatggaaaacctgcatgaagaattgtaaagtgtgtttaatgatgttaataataataacatatgtgaagcttgtcaactaatagctactaactctaat |
28168317 |
T |
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| Q |
207 |
aaaaaccgtaagatgaaaattgtc-aaaatttattggattccattagacaagcatgaataattatctctagcacaatcaaagctactaaccatc |
299 |
Q |
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| T |
28168318 |
aaaaaccgtaagatgaaaattgtcaaaaatttattggattccattagacaagcatgaataattatctctagcacaatcaaagctactaaccatc |
28168411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 28 - 385
Target Start/End: Original strand, 28171787 - 28172141
Alignment:
| Q |
28 |
tccaataatacgaatggtatttgttaatgatgcaacaagtt-gcaaataagtgaatttagcttaggatgctacctcattgttacatggaaaacctgcatg |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
28171787 |
tccaataatacgaatggtatttgttaatgatgcaacaagtttgcaaataggtgaatttagtttaggatgctacctcattgttacatggaatacctgcatg |
28171886 |
T |
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| Q |
127 |
aagaattgcaaggtgtgtttaatgatgttaataataataacatatgtgaagcttgtcaactaatagctactaagtctaataaaaaccgtaagatgaaaat |
226 |
Q |
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| T |
28171887 |
aagaattgcaaggtgtgtttaatgatgttgataatag---cctatgtgaaggttgtcaactaatagctactaactctaatgaaaaccgtgagaagaaaat |
28171983 |
T |
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| Q |
227 |
tgtcaaaatttattggattccattagacaagcatgaataattatctctagcacaatcaaagctactaaccatcgtaaaataccaccccatacattttcaa |
326 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||| | | |
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| T |
28171984 |
tgtcaaactttattggactccattagacaagcatgaataattatctctaccacaatcgaagctactaaccaccgtaaaataccaccccacacatttccca |
28172083 |
T |
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| Q |
327 |
agaaaacacaataaatgaaaagatgctgaagactttcttcctttttgtacatacctaca |
385 |
Q |
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| |||||||||| |||||||| ||| |||| ||||||||||||||| ||| |||||||| |
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| T |
28172084 |
ataaaacacaatcaatgaaaatatgttgaaaactttcttccttttt-tacctacctaca |
28172141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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