View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14702_low_6 (Length: 502)
Name: NF14702_low_6
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 29322559 - 29322077
Alignment:
| Q |
1 |
aacctgccctacgcaatccgtttgatccggatataaacccaccactgcgcaattacttggaagaaataatgaacaagagaaggcgcatcgaacacaacca |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29322559 |
aacctcccctacgcaatccgtttgatccggatataaacccaccactgcgcaatcacttggaagaaataatgaacaagagaaggcgcatcgaacacaacca |
29322460 |
T |
|
| Q |
101 |
agataaatcactcatccacggcctccaacttcaagaacacgcaacaagattgctcggatccaacgacctcgcatcgctgcaacaagcaatcgaagaatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29322459 |
agataaatcactcatccacggcctccaacttcaagaacacgcaacaagattgctcggatccaacgacctcgcatcgctgcaacaagcaatcgaagaatac |
29322360 |
T |
|
| Q |
201 |
actcaaaccaatagcgaatctttaatgaaaatctttaaatcattcgcacaccattacgttaatggcttctcattgaagcttgccaaaatcctcgaactcc |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29322359 |
actcaaaccaataacgaatctttaatgaaaatctttaaatcattcgcacaccattacattaatggcttctcattgaagcttgccaaaatcctcgaactcc |
29322260 |
T |
|
| Q |
301 |
accctccgctacaaacaagaaccgaaatcgtttctcttctacttcaaacacttcccagagggataaacagttcaatgagtttgtctatccttctcaatct |
400 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29322259 |
accctccgctgcaaacaagaaccgaaatcgtttctcttctacttcaaacacttcccagagggataaacagttcaatgagtttgtctatccttctcaatct |
29322160 |
T |
|
| Q |
401 |
aaaaaatcctctcttaaattcgctcaaggtagaatccgaagaaattctgtttccttcgctatgcgaaatgatgggtttattcg |
483 |
Q |
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| T |
29322159 |
aaaaaatcctctcttaaattcgctcaaggtagaatctgaagaaattctgtttccttcgctatgcgaaatgatgggtttattcg |
29322077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 29305361 - 29305161
Alignment:
| Q |
10 |
tacgcaatccgtttgatccggatataaacccaccactgcgcaattacttggaagaaataatgaacaagagaaggcgcatcgaacacaaccaagataaatc |
109 |
Q |
| |
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||||||||||||||||||| ||||| ||| | || | ||||||| |||| | |||| ||| |||||||||||| ||||||| | |||||||| | ||| |
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| T |
29305361 |
tacgcaatccgtttgatccagatatcaacacgcctccgcgcaatcgcttgcacgaaagaatcaacaagagaaggtccatcgaagaaaaccaagacagatc |
29305262 |
T |
|
| Q |
110 |
actcatccacggcctccaacttcaagaacacgcaacaagattgctcggatccaacgacctcgcatcgctgcaacaagcaatcgaagaatacactcaaacc |
209 |
Q |
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||||||||||||| || |||||| | ||||||| ||| || ||| ||||||||||||| | ||| ||||| |||||||||| |||||| |||||||| |
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| T |
29305261 |
actcatccacggcttcgaacttcgacaacacgccgaaaggtttctcctatccaacgacctctcgtcgttgcaagaagcaatcgatgaatactctcaaacc |
29305162 |
T |
|
| Q |
210 |
a |
210 |
Q |
| |
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| |
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| T |
29305161 |
a |
29305161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 29333724 - 29333610
Alignment:
| Q |
27 |
ccggatataaacccaccactgcgcaattacttggaagaaataatgaacaagagaaggcgcatcgaacacaaccaagataaatcactcatccacggcctcc |
126 |
Q |
| |
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|||||||||||||| |||| |||||| ||||||||||||||| | ||||| |||| ||||||||| | |||||||| |||||||| |||| ||| || |
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| T |
29333724 |
ccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctccatggcttcg |
29333625 |
T |
|
| Q |
127 |
aacttcaagaacacg |
141 |
Q |
| |
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|||||||| |||||| |
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|
| T |
29333624 |
aacttcaacaacacg |
29333610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 482
Target Start/End: Complemental strand, 29304956 - 29304892
Alignment:
| Q |
418 |
attcgctcaaggtagaatccgaagaaattctgtttccttcgctatgcgaaatgatgggtttattc |
482 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |||||| || || ||||| | ||||||| |
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| T |
29304956 |
attcgcttaaggtagaatccgaagaaattctgtttcgttcgctgtgtgagatgatcgctttattc |
29304892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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