View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14702_low_7 (Length: 490)
Name: NF14702_low_7
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_low_7 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 23697061 - 23697533
Alignment:
| Q |
18 |
tgattgtagagagtttcaaagcttggaagacggcgagcgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtcca |
117 |
Q |
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| T |
23697061 |
tgattgtagagagtttcaaagcttggaagatggcgagcgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtcca |
23697160 |
T |
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| Q |
118 |
aagtgcagcttctatgtggagaaaattgaggggtgcactcgcatttcatgcaggtatagacaattctcttttgttaagaattctacttttgcatttttat |
217 |
Q |
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| T |
23697161 |
aagtgcagcttctatgtggagaaaattgagggatgtactcgcatttcatgcaggtatagacaattctcttttgttaagaattctacttttgcatttttat |
23697260 |
T |
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| Q |
218 |
tttgggtgcttgcttaaatattagttattctgctttgatttgtaagaaaaaatttggcatattgattttatccgcaggtgtggtaatcaattttgctatg |
317 |
Q |
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| T |
23697261 |
ttttggtgcttgcttaaatattagttattctgctttgatttgtaaaaaaaaatttgtcatattgtttttatccgcaggtgtggtaatcaattttgctatg |
23697360 |
T |
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| Q |
318 |
gatgtggatccacttggaatactgactcccattataagtgtgcaactggatagaaatggcatgacgagtgaaattgcatagcacaacgttacatcaattg |
417 |
Q |
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| T |
23697361 |
gatgtggatccacttggaatactgactcccattataagtgtgcaactggatagaaattgcatgacgagtgaaattgcatagcacaacgttacatcaattg |
23697460 |
T |
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| Q |
418 |
cttgattgatgtatatttgaaaatatgattgtgatatgtaatattgagtaggagttttatttttgtttcttgt |
490 |
Q |
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| T |
23697461 |
cttgattgatatatatttgaaaatatgattttgatatgtaatattgagtaggagttttatttttgtttcttgt |
23697533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 23700871 - 23700682
Alignment:
| Q |
18 |
tgattgtagagagtttcaaagcttggaagacggcgagcgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtcca |
117 |
Q |
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| T |
23700871 |
tgattgtaaagtgtttcaaagcttgaaagacggcgagcgagggatggaagatctaatggccatggaacttgcaaagaacaagagatggaaaagatgtcca |
23700772 |
T |
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| Q |
118 |
aagtgcagcttctatgtggagaaaattgaggggtgcactcgcatttcatgcaggtatagacaattctcttttgttaagaattctactttt |
207 |
Q |
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| T |
23700771 |
aagtgtggcttctatgtggaaaaaattgtgggatgtactcgcatttcatgcaggtatattcaattctcttttgttaaaaattctactttt |
23700682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 23694930 - 23695057
Alignment:
| Q |
18 |
tgattgtagagagtttcaaagcttggaagacggcgagcgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtcca |
117 |
Q |
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| T |
23694930 |
tgattgtaaagagtttctaagcttgaaagatggtgagcgagggagggaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtcca |
23695029 |
T |
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| Q |
118 |
aagtgcagcttctatgtggagaaaattg |
145 |
Q |
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| T |
23695030 |
aagtgtggcttctatgtggaaaaaattg |
23695057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 23700648 - 23700587
Alignment:
| Q |
291 |
gcaggtgtggtaatcaattttgctatggatgtggatccacttggaatactgactcccattat |
352 |
Q |
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| T |
23700648 |
gcaggtgtggcaatcaattttgctatggctgtggttctccttggaataatcagtcccattat |
23700587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 8148963 - 8148820
Alignment:
| Q |
66 |
agatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgaggggtgcactcgcatttca |
165 |
Q |
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| T |
8148963 |
agatctaatggctctggaacttgctaagaaaaagaaatggaaaaggtgtccaagatgcaacttctatgtggaaaaaaaaggtggatgtaatcacattaga |
8148864 |
T |
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| Q |
166 |
tgcaggtatagaca--attctcttttgttaagaattctactttt |
207 |
Q |
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| T |
8148863 |
tgcaggtatagacaatattttcttatgttaagaattctactttt |
8148820 |
T |
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