View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14702_low_9 (Length: 425)
Name: NF14702_low_9
Description: NF14702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14702_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 406
Target Start/End: Original strand, 39824223 - 39824626
Alignment:
| Q |
7 |
atgatactgaaatggtttatgattttgatagcccaggatcgccaaaacaaagctcaattcttaaggtatccaaattgctggataactatcttgctgaagt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39824223 |
atgaaactgaaatggtttatgattttgatagcccaggatcgccaaaacaaagctcaattcttaaggtatccaaattgctggataactatcttgctgaagt |
39824322 |
T |
|
| Q |
107 |
agctttagacccaaacttgcttccatcaaagttcatttcacttgctgagttacttcctgatcatgcgcgaattgtaagcgatggactctatagagcagtc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39824323 |
agctttagacccaaacttgcttccatcaaagttcatttcacttgctgagttacttcctgatcatgcgcgaattgtaagcgatggactctatagagcagtc |
39824422 |
T |
|
| Q |
207 |
gatatcttccttaaggtgagtagttttttctttcaaataaatcaacaatcaatttagtccctcaaattatcagggtcagacaatttgacctct-aaagta |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39824423 |
gatatcttccttaaggtgagtagttttttctttcaaataaatcaacaatcaatttagtccctcaaattatcagggtcagacaatttgacctctaaaagta |
39824522 |
T |
|
| Q |
306 |
acaaaattgaaaattttttatcacattagtctctgtcggacaatttcaaagactaaattggccgactcatcagac---taggatgagctatttccatttc |
402 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39824523 |
acaaaattgaaaattttcgatcacattagtctctgtcggacaatttcaaagactaaattggccgactcatcagactaataggatgagctatttccatttc |
39824622 |
T |
|
| Q |
403 |
aact |
406 |
Q |
| |
|
|||| |
|
|
| T |
39824623 |
aact |
39824626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 44047768 - 44047569
Alignment:
| Q |
24 |
tatgattttgatagcccaggatcgccaaaacaaagctcaattcttaaggtatccaaattgctggataactatcttgctgaagtagctttagacccaaact |
123 |
Q |
| |
|
||||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||| || || || | ||| ||||||||||| ||||| |||||| |
|
|
| T |
44047768 |
tatgaatttgacagtcctggatctccaaaacaaagctcaattcttaaggtatccaaattacttgacaattttctcgctgaagtagcactagactcaaact |
44047669 |
T |
|
| Q |
124 |
tgcttccatcaaagttcatttcacttgctgagttacttcctgatcatgcgcgaattgtaagcgatggactctatagagcagtcgatatcttccttaaggt |
223 |
Q |
| |
|
|| | |||||||| ||||| ||||||| || ||||||| |||||||| || || |||||||||||||||| |||| || || |||||||| ||||| |
|
|
| T |
44047668 |
tgttgccatcaaaattcatagcacttgcagaactacttccggatcatgcccgcgttacaagcgatggactctatcgagctgttgacatcttcctcaaggt |
44047569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University