View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14703_high_1 (Length: 640)
Name: NF14703_high_1
Description: NF14703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14703_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 14 - 538
Target Start/End: Complemental strand, 26143782 - 26143245
Alignment:
| Q |
14 |
attatactatgctggaagccatggaatggatattaagggtccaacaaataggagaagcactaaaaaagtgagaaataatttctcaatccaaattattgcg |
113 |
Q |
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| T |
26143782 |
attatactatgctggaagccatgggatggatattaagggtccaacaaataggagaagcactaaaaaagtgagaaataatttctctatccaaattattgcg |
26143683 |
T |
|
| Q |
114 |
acggagattattatattttgttgttattttaactaatttcatctattattatttcagggtaataatgatggggtacttttgcagcctgctagtgaatttt |
213 |
Q |
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| T |
26143682 |
acggagattattatattttgttgttattttaactaatttcatctatttttatttcagggtaataatgatggggtacttttgcagcctgctagtgaatttt |
26143583 |
T |
|
| Q |
214 |
tgcccatgatcaatgaggttcgtagcttttaattaattattacgaccaaaattttttagttacaccattcccattaggtatgggattttaactgtgccta |
313 |
Q |
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| T |
26143582 |
tgcccatgatcaatgaggttcgtagcttttaattaattattaccaccaaaattttttagttacaccattcccattaggtatgggattttaactgtgccta |
26143483 |
T |
|
| Q |
314 |
annnnnnnnnnnnnnnnnnnatcaggtttataagatcttggtggagaaaacaaagtgtgttcaaggggctatggtagaaaataacaagttttgtttatct |
413 |
Q |
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| T |
26143482 |
atttttttattttatttttgatcaggtttataagatcttggtggagaaaacaaagtgtgttccaggggctatggtggaaaataacaagttttgtttatct |
26143383 |
T |
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| Q |
414 |
gtgcattttcgcaacgttgacgaaaaggtaataatggtcaac-----------tcaaaatttaatttaaagta--tttctatacttaggaagtaaacaca |
500 |
Q |
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| T |
26143382 |
gtgcattttcggaacgttgacgaaaaggtaacaatggtcaacacaaaatttctacaaaatttaatttaaagtatttttctatacttaggaagtaaacaca |
26143283 |
T |
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| Q |
501 |
cgtagtgaacacgcacaaaacacgttaatgatgatggg |
538 |
Q |
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| T |
26143282 |
cgtagtgaacacgcacaaaacacgttaatgatgatggg |
26143245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 53634058 - 53633815
Alignment:
| Q |
19 |
actatgctggaagccatggaatggatattaagggtccaacaaataggagaagcactaaaaaagtgagaaataatttctcaatccaaattattgcgacgga |
118 |
Q |
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||||| ||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53634058 |
actatactggaagccatgggatggatatcaagggaccaacaaataggagaagcaataaaaaagtgagaaataatttctctatccaaattattgcgacgga |
53633959 |
T |
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| Q |
119 |
gattattatattttg----ttgttattttaac--taatttcatctattattatttcagggtaataatgat-ggggtacttttgcagcctgctagtgaatt |
211 |
Q |
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| T |
53633958 |
gattattatattttgttttttttttttttaacaaaaaagaaatctattattatttcagggtaataatgatgggggtacttttgcagtctgctagtgaatt |
53633859 |
T |
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| Q |
212 |
tttgcccatgatcaatgaggttcgtagcttttaattaattatta |
255 |
Q |
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||||| || |||||||||||||||||||||||||||||||||| |
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| T |
53633858 |
cttgccaattatcaatgaggttcgtagcttttaattaattatta |
53633815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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