View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14703_high_10 (Length: 249)
Name: NF14703_high_10
Description: NF14703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14703_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 6495524 - 6495282
Alignment:
| Q |
1 |
ctagtttactcactgtgacaccatttcgatgtgcttagacaaaatgcctcccaagaagaggtaggtcaataaatttcatataagccaagaactgattgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6495524 |
ctagtttactcactgtgacaccatttcgatgtgcttagacaaaatgcctcccaagaagaggtaggtcaataaattccatataagccaagaactgattgaa |
6495425 |
T |
|
| Q |
101 |
ccactatatataatgttaagctatgttggattccctgattcaaacctcttcgctcatcaaagttagtaactaaattaaaatctcccatcgtataccattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6495424 |
ccactatatataatgttaagctatgttggattccctaattcaaacctcttcgctcatcaaagttagtaactaaattaaaatctcccatcgtacaccattg |
6495325 |
T |
|
| Q |
201 |
ttctccaccaaatcctcttctaaacattaaaatacaatcacat |
243 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6495324 |
ttctccaccaaatcctcttcttaacattaaaatacaatcacat |
6495282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31730277 - 31730034
Alignment:
| Q |
1 |
ctagtttactcactgtgacaccatttcgatgtgcttagacaaaatgcctcccaagaagaggtaggtcaataaatttcatataagccaagaactgattgaa |
100 |
Q |
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|
||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
31730277 |
ctagtctactcattgtgacaccatttcgatgtgcttagacagaatgcctcccaagaagaggcaggtcaataaattccatataagccaagaactgattgaa |
31730178 |
T |
|
| Q |
101 |
ccactatatataat-----gttaagctatgttggattccctgattcaaacctcttcgctcatcaaagttagtaactaaattaaaatctcccatcgtatac |
195 |
Q |
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||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31730177 |
ccactatatatgatatgatgttaagctatgttggattccc-gattcaaacctcttcgctcatcaaagttagtaactaaattaaaatctcccatcgtacac |
31730079 |
T |
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| Q |
196 |
cattgttctccaccaaatcctcttctaaacattaaaatacaatca |
240 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31730078 |
cactgttctccaccaaatcctcttctaaacattaaaatacaatca |
31730034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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