View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14703_high_11 (Length: 247)
Name: NF14703_high_11
Description: NF14703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14703_high_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 6495921 - 6495686
Alignment:
| Q |
12 |
aatactttaatggcatttacttttctcctaaatttaacgtaaccatgaaggaaacttgaacttatatcaccttcctttagctaccttgatcttgatcatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6495921 |
aatactttaatggcatttacttttctcctaaatttaacataaccatgaaggaaacttgaacttatatcaccttcctttagccaccttgatcttgatcatt |
6495822 |
T |
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| Q |
112 |
ggaaagtgagggcatccttgctttttaagaacatccataactttccaaaaaacctcctacatttctcaatcttgctagtcaagatagcctagtattcaca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6495821 |
ggaaagtgagggcatccttgctttttaagaacatccatacctttccaaaaaacctcctacatttctcaatcttgctagtcaagatagcctagtattcaca |
6495722 |
T |
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| Q |
212 |
cctcaaatctaagacattcaattctttcgtcaactt |
247 |
Q |
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| T |
6495721 |
cctcaaatctaagacattcaattccttcatcaactt |
6495686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 31730673 - 31730457
Alignment:
| Q |
12 |
aatactttaatggcatttacttttctcctaaatttaacgtaaccatgaaggaaacttgaacttatatcaccttcctttagctaccttgatcttgatcatt |
111 |
Q |
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|||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
31730673 |
aatactttaacggcctttacttttctcctaaatttaacataaccatgaaggaaacttgaacttatatcaccttcctttagccaccttggtcttgatcatt |
31730574 |
T |
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| Q |
112 |
ggaaagtgagggcatccttgctttttaagaacatccataactttccaaaaaa-cctcctacatttctcaatcttgctagtcaagatagcctagtattcac |
210 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31730573 |
ggaaagcaagggcatctttgctttttaagaacatccataactttccaaaaaagcctcctacatttctcaatcttgctagtcaagatagcttagtattcac |
31730474 |
T |
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| Q |
211 |
acctcaaatctaagaca |
227 |
Q |
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||||||||||||||||| |
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| T |
31730473 |
acctcaaatctaagaca |
31730457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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