View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14703_low_15 (Length: 225)
Name: NF14703_low_15
Description: NF14703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14703_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 23305219 - 23305348
Alignment:
| Q |
79 |
cagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagatgtttctatgattgtaatatttgttttgatttggctaaggatcctgttcttac |
178 |
Q |
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| T |
23305219 |
cagagaaaaaggagaatattgatgaaaaggattgtggcaatgatagaggtttctatgattgtaatatttgttttgtattggctaaggatcctgttcttac |
23305318 |
T |
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| Q |
179 |
ttgttgtggccatttgttttgttggccatg |
208 |
Q |
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| T |
23305319 |
ttgttgtggccatttgttttgttggccatg |
23305348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 23552699 - 23552828
Alignment:
| Q |
79 |
cagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagatgtttctatgattgtaatatttgttttgatttggctaaggatcctgttcttac |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23552699 |
cagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagaggtttctatgattgtaatatttgttttgatttggctaaggaacctgttcttac |
23552798 |
T |
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| Q |
179 |
ttgttgtggccatttgttttgttggccatg |
208 |
Q |
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| T |
23552799 |
ttgttgcggtcatttgttttgttggccatg |
23552828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 23324170 - 23324244
Alignment:
| Q |
134 |
tgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatg |
208 |
Q |
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| T |
23324170 |
tgattgtaatatttgtttagatttggctaagaatcctgtggttacttgttgtggtcatttgttttgttggccatg |
23324244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 23234976 - 23235057
Alignment:
| Q |
127 |
gtttctatgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatg |
208 |
Q |
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| T |
23234976 |
gtttctatgattgtaatatttgtttaggtttggctaaggatcctgttgtgactcgttgcggtcatttgttctgttggccatg |
23235057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 37120092 - 37120162
Alignment:
| Q |
134 |
tgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggc |
204 |
Q |
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| T |
37120092 |
tgattgtaatatctgtttggatttggccaaggagcctgttttgacttgctgtggccatctgttttgttggc |
37120162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 10174769 - 10174692
Alignment:
| Q |
128 |
tttctatgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggcc |
205 |
Q |
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||||| |||||||||||||||||| ||| | || | ||||||||| | || |||||||| ||||||||||||||||| |
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| T |
10174769 |
tttctttgattgtaatatttgtttggatattgcaagagatcctgttttgacatgttgtggtcatttgttttgttggcc |
10174692 |
T |
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