View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14703_low_2 (Length: 504)

Name: NF14703_low_2
Description: NF14703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14703_low_2
NF14703_low_2
[»] chr5 (3 HSPs)
chr5 (254-500)||(26619472-26619718)
chr5 (17-241)||(26619860-26620086)
chr5 (34-65)||(11925995-11926026)
[»] chr4 (2 HSPs)
chr4 (25-77)||(35088814-35088866)
chr4 (440-488)||(22645746-22645794)
[»] scaffold0006 (1 HSPs)
scaffold0006 (369-427)||(90400-90458)
[»] chr3 (1 HSPs)
chr3 (22-68)||(19585303-19585349)
[»] chr2 (2 HSPs)
chr2 (252-296)||(23682798-23682842)
chr2 (25-77)||(27034840-27034892)
[»] chr1 (1 HSPs)
chr1 (252-296)||(37736897-37736941)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 254 - 500
Target Start/End: Complemental strand, 26619718 - 26619472
Alignment:
Q  254 ttgcagcagctactggtgagcttcattggcttctttatcttctcatagaccttgacattgcttgcatcaaaatgcatgtgttaataatcaaagttcccta 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26619718 ttgcagcagctactggtgagcttcattggcttctttatcttctcatagaccttgacactgcttgcaacaaaatgcatgtgttaataatcaaagttcccta 26619619  T
Q  354 catgttgcagccaaccttgtgttccatgaacgtactaagcattttgatatagattgccacattgtcagagagaaatggttaagtcatgaaacttcttcca 453  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26619618 catgttgcagccaaccttgtgttccatgaacgtactaagcatttggatatagattgccacattgacagagagaaatggttaagtcatgaaacttcttcca 26619519  T
Q  454 gtttcttccaaagaccaaattgttgatttcttcactaagtctctgct 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26619518 gtttcttccaaagaccaaattgttgatttcttcactaagtctctgct 26619472  T

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Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 26620086 - 26619860
Alignment:
Q  17 aggatttaggtcaactcaaatattttcttggtattgaagtagctcattccaaagctggcatctccatttgttagaaaaaatattgcttagatcttctttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26620086 aggatttaggtcaactcaaatattttcttggtattgaagtagctcattccaaagctggcatctccatttgttagaaaaaatattgcttagatcttctttc 26619987  T
Q  117 tgagtcaggccttcttgactctaaaccagtttccacccgatcagactgattctctgagagtcctaagatatcttatgaattctcctgggtgtgg--tctt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||    
T  26619986 tgagtcaggccttcttgactctaaaccagtttccacccgatcagactgattctctgagagtcctaagatatctcatgaattctcctgggtgtggcctctt 26619887  T
Q  215 ctaccactcatcttttaggcttttctg 241  Q
    |||||||||||||||||||||| ||||    
T  26619886 ctaccactcatcttttaggcttctctg 26619860  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 65
Target Start/End: Original strand, 11925995 - 11926026
Alignment:
Q  34 aaatattttcttggtattgaagtagctcattc 65  Q
    ||||||||||||||||||||||||||||||||    
T  11925995 aaatattttcttggtattgaagtagctcattc 11926026  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 35088814 - 35088866
Alignment:
Q  25 ggtcaactcaaatattttcttggtattgaagtagctcattccaaagctggcat 77  Q
    |||||||||||||| || ||||||||||| || |||||||||||||| |||||    
T  35088814 ggtcaactcaaatacttccttggtattgaggttgctcattccaaagcaggcat 35088866  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 22645746 - 22645794
Alignment:
Q  440 tgaaacttcttccagtttcttccaaagaccaaattgttgatttcttcac 488  Q
    |||||||||| |||||||||||  |||| ||||||| ||||||||||||    
T  22645746 tgaaacttctcccagtttcttctcaagatcaaattgctgatttcttcac 22645794  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 427
Target Start/End: Original strand, 90400 - 90458
Alignment:
Q  369 cttgtgttccatgaacgtactaagcattttgatatagattgccacattgtcagagagaa 427  Q
    |||||||||||||||||||| ||||| || || |||||||| || ||||| ||||||||    
T  90400 cttgtgttccatgaacgtaccaagcacttagaaatagattgtcatattgtaagagagaa 90458  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 19585349 - 19585303
Alignment:
Q  22 ttaggtcaactcaaatattttcttggtattgaagtagctcattccaa 68  Q
    |||||||| || ||||||||||||||||||||||| ||||| |||||    
T  19585349 ttaggtcagcttaaatattttcttggtattgaagttgctcactccaa 19585303  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 23682798 - 23682842
Alignment:
Q  252 tcttgcagcagctactggtgagcttcattggcttctttatcttct 296  Q
    |||||||||||||||| |||| || || |||||||||||||||||    
T  23682798 tcttgcagcagctacttgtgaactgcagtggcttctttatcttct 23682842  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 27034892 - 27034840
Alignment:
Q  25 ggtcaactcaaatattttcttggtattgaagtagctcattccaaagctggcat 77  Q
    |||||||||||||| || ||||| ||||| || |||||||||||||| |||||    
T  27034892 ggtcaactcaaatacttccttggcattgaggttgctcattccaaagcaggcat 27034840  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 37736941 - 37736897
Alignment:
Q  252 tcttgcagcagctactggtgagcttcattggcttctttatcttct 296  Q
    |||||||||||||||| |||| || || |||||||||||||||||    
T  37736941 tcttgcagcagctacttgtgaactgcagtggcttctttatcttct 37736897  T

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