View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14703_low_4 (Length: 410)
Name: NF14703_low_4
Description: NF14703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14703_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 394
Target Start/End: Original strand, 18421977 - 18422369
Alignment:
| Q |
10 |
agatcaacggtggtcaaagtagtgattgatggtggtcgtagtggtggacaaaatggtgataggtggccatat-atatcgtcccagatggtaacat-tttt |
107 |
Q |
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| T |
18421977 |
agatcaacggtggtcaaagtagtgattgatggtggtcgtagtggtggacaaaatggtgataggtggcctggccatatcgtcccagatggtcacatctttt |
18422076 |
T |
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| Q |
108 |
tcacatcataagtctgttttattgaatggtttgggacaaagatttgctcaatatgcaaggcagagtttgtctgcggatgtgggctcag------ggaaac |
201 |
Q |
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| T |
18422077 |
tcacatcataagtctgttttattgaatggtttgggacaaagatttgctcgatatgcaaggcagagtttgtatgcggatgtgggctcagaagttcggaaac |
18422176 |
T |
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| Q |
202 |
ggtgttattgacattactccaagtccaaaccttatattgaagacgaaacagaaacttttcttgaccatgaaggacaccctcagatgagttttcatctcat |
301 |
Q |
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| T |
18422177 |
ggtgttatcgacattactccaagtcccaaactcatattgaagacgaaacagaaacttttcttgaccatgaaggacaccctcatatgagttttcacctcat |
18422276 |
T |
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| Q |
302 |
tgaaatggatatttgaagagggatcttgttaacctctgtcatattcttatcataatactatttgttattttcttattctcaactaaaacatgt |
394 |
Q |
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| T |
18422277 |
tgaaatggatatttgaagagggatcttgttaccctctgtcatattcttatcataatagtatttgttattttcttattctcaactaaaacatgt |
18422369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 394
Target Start/End: Original strand, 18435492 - 18435883
Alignment:
| Q |
8 |
agagatcaacggtggtcaaagtagtgattgatggtggtcgtagtggtggacaaaatggtgataggtggccatatatatcgtcccagatggtaacat-ttt |
106 |
Q |
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| T |
18435492 |
agagatcaacattggtcaa-gtagtgattgatggtggtcgtagtggtggacaaaatggtgataggtggtcatat----cgtcccagatggtcacatcttt |
18435586 |
T |
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| Q |
107 |
ttcacatcataagtctgttttattgaatggtttgggacaaagatttgctcaatatgcaaggcagagtttgtctgcggatgtgggctcag------ggaaa |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
18435587 |
ttcacatgataagtctgttttattgaatggtttgggacaaagatttgctcaatatgcaaggcagagtttgtatgcggatgtgggctcaaaagtttggaaa |
18435686 |
T |
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| Q |
201 |
cggtgttattgacattactccaagtccaaaccttatattgaagacgaaacagaaacttttcttgaccatgaaggacaccctcagatgagttttcatctca |
300 |
Q |
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|||||| || ||| |||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||| | ||||||||||| |||| |
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| T |
18435687 |
cggtgtgatcgacgttactccaagtccaaaacttatattgaagatgaaacaaaaacttttcttcaccatgaaggacacccttatatgagttttcacctca |
18435786 |
T |
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| Q |
301 |
ttgaaatggatatttgaagaggga---tcttgttaacctctgtcatattcttatcataatactatttgttattttcttattctcaactaaaacatgt |
394 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18435787 |
ttgaaatggatatttgacgagggatcttcttgttaacctctgtcatattcttatcataatagtatttgttattttcttattctcaactaaaacatgt |
18435883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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