View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14703_low_5 (Length: 348)
Name: NF14703_low_5
Description: NF14703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14703_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 46 - 348
Target Start/End: Complemental strand, 13848664 - 13848364
Alignment:
| Q |
46 |
tgggtaatgattttcgtcattgtgctagtttatccagtccatgaacaactttttgtaccatggtttaggtaaaaaattcatatttttgtccaatccctca |
145 |
Q |
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| T |
13848664 |
tgggtaatgattttcgtcattgtgctagtttatcctgtccatgaacaactttttgtaccatggtttaggtaaaaaaaatggatttttgtccaatccctca |
13848565 |
T |
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| Q |
146 |
cccctttattgtctagtctcatggttaactttcaaaccaaccatgacacgaatattttttccctgtctattacctcagtttatttcatatcaaacacatc |
245 |
Q |
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| T |
13848564 |
ccccttttttgtctagtctcatggtcaattttcaaaccaaccataagactaatttttttttcctatctattacc-caatttattgcatatcaaacacatc |
13848466 |
T |
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| Q |
246 |
ctaagactgaattccactatatacaaaataatccatcaatatttcataaactgttgtgttaagaaaactagtaattcaaaataaataaaaaattaattaa |
345 |
Q |
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| T |
13848465 |
ctaagactgaattccactatataaaaaataatccatc-atatttcataaattgctgtgttaagaaaacttgtaattcaaaaaaaataaaaaattaattaa |
13848367 |
T |
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| Q |
346 |
ttt |
348 |
Q |
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| T |
13848366 |
ttt |
13848364 |
T |
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