View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14703_low_6 (Length: 312)
Name: NF14703_low_6
Description: NF14703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14703_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 43539990 - 43540133
Alignment:
| Q |
13 |
aaaatcttcatcatcatcaatgccattagcttcaccaatatcacaaacataacatgaaatcataacattaccttatctttttcattacatcaacttcatt |
112 |
Q |
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| T |
43539990 |
aaaatcttcatcatcatcaatgccattagcttcaccaatatcacaaacataacatgaaatcataacattaccttatctttttcattacatcaacttcatt |
43540089 |
T |
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| Q |
113 |
tccatgtcttcacattgctttgttcattttccaccttcatcttc |
156 |
Q |
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| T |
43540090 |
tccatgtcttcacattgctttgttcattttccaccttcatcttc |
43540133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 43540236 - 43540281
Alignment:
| Q |
259 |
tctcaactttaacaacctcaatttcctcaaattcactgtaaccctc |
304 |
Q |
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| T |
43540236 |
tctcaactttaacaacctcaatttcctcaaattcactgtaaccctc |
43540281 |
T |
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