View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_high_18 (Length: 210)
Name: NF14704_high_18
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 4838543 - 4838642
Alignment:
| Q |
95 |
tatatatataattgaaagaacatatcaatagcttgcgtcttcttatatcacaactgtgttaaacttcattctattggtactttacgtttaaaaaacaaag |
194 |
Q |
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| T |
4838543 |
tatatatataattgaaagaacatatcaataacctgcgtcttcttgtatcacaactgtgttaaacttcattctattggtactttacgtttaaaaaacaaag |
4838642 |
T |
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Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 4832091 - 4832176
Alignment:
| Q |
114 |
acatatcaatagcttgcgtcttcttatatcacaactgtg----ttaaacttcattctattggtac-tttacgtttaaaaaacaaag |
194 |
Q |
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| T |
4832091 |
acatatcaatagtctgcgtcttcttgtatcacaactgtgttaattaaacttcattctattagtacttttacgtttaaaaaacaaag |
4832176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 4838160 - 4838190
Alignment:
| Q |
34 |
tgttcaaatagcatacctcttcatgtttaaa |
64 |
Q |
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| T |
4838160 |
tgttcaaatagcatacctcttcatgtttaaa |
4838190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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