View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_high_19 (Length: 208)
Name: NF14704_high_19
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 43027413 - 43027575
Alignment:
| Q |
28 |
aatgaaggacatctcactttggtgccccacctatcttcgatacggatgttgaacttccctaaccctacaaaaaccaatgttacccaacaaccgtgtttta |
127 |
Q |
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| T |
43027413 |
aatgaaggacatctcactttggtgccccacctatcttcgatacggatgttgaacttccctaaccctacaaaaatcaatgttacccaagaaccaagtttta |
43027512 |
T |
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| Q |
128 |
tgttgtaaaagtcgcgtagagcacgccagcctttggtaaagaagatgccatagttgtttctct |
190 |
Q |
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| T |
43027513 |
tgttgtaaaagccgcgtagagcatgccggcctttggtaaagaagatgccacagttgtttctct |
43027575 |
T |
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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 41395285 - 41395332
Alignment:
| Q |
66 |
gatacggatgttgaacttccctaaccctacaaaaaccaatgttaccca |
113 |
Q |
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| T |
41395285 |
gatactgattttgaacttcactaaccctacaaagaccaatgttaccca |
41395332 |
T |
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