View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14704_high_6 (Length: 335)
Name: NF14704_high_6
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_high_6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 45699963 - 45699641
Alignment:
| Q |
9 |
tatgagttctttaatatacttgatttcttttttgaattcttctgagcaattatgaagaaatata----atacagttttccaaagtgctcatactctcgac |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
45699963 |
tatgagttctttaatatacttgatttcttttttgaattcttctgagcaattatgaagaaatatatataatacaattttccaaagtgctcatactctcgac |
45699864 |
T |
|
| Q |
105 |
aatcttaggtgttatatttatatggtaggtaggtagatgcataacaaatgtatcaattctaattctaaatatggtggtacttctctatctgcccacgcta |
204 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45699863 |
aatcttaggtcttatatttatatggtagttag----atgcataacaaatgtatcaattctaattctaaatatggtggtacttctctatctgcccacgcta |
45699768 |
T |
|
| Q |
205 |
tatatatattaattatctgaagtattgtgtttattattgttcttaggcaccatagattatagtaataatgataaaaagatgttgattgactgcttccaac |
304 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45699767 |
tatatat--taattatctgaagtattgtgtttattattgttcttaggcaccatagattatagtaataatgataaaaagatgttgattgactgcttccaac |
45699670 |
T |
|
| Q |
305 |
aacctcctatatgtgtttctgctctgataaa |
335 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
45699669 |
aacctcc--tatgtgtttctgctctgataaa |
45699641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University