View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_high_9 (Length: 315)
Name: NF14704_high_9
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 44007348 - 44007063
Alignment:
| Q |
19 |
tcacatattcacatcactacacaaccacttgttcctttcccttcccttcttcatttccctcaatcattttaccatctttttcaaatacactttcaatcaa |
118 |
Q |
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| T |
44007348 |
tcacatattcacatcactacacaaccacttgttcctttcccttcccttcttcatttcccttaatcattttaccatctttttcaaatacactttcaatcaa |
44007249 |
T |
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| Q |
119 |
tggtctttgaatcctttgggctgtttgggaatattgattacatagggggaatcatagatgttggtaaaagttgaaaaggagttggacgtagcttagggag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44007248 |
tggtctttgaatcctttgggctgtttgggaatattgattacatagggggaatcatagatgttggtaaaagttgaaaaggagttggacgtagcttagggag |
44007149 |
T |
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| Q |
219 |
ttatggctcactgtcttacttcttttgttttctctattttgtatttgttatattgggagtagcagttagtcacatatgcacaggtt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44007148 |
ttatggctcactgtcttacttcttttgttttctctattttgtatttgttatattgggagtagcagttagtcacatatgcataggtt |
44007063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 33169392 - 33169315
Alignment:
| Q |
19 |
tcacatattcacatcactacacaaccacttgttcctttcccttcccttcttcatttccctcaatcattttaccatctttttca |
101 |
Q |
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|||||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||| |
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| T |
33169392 |
tcacatattcacatcactacacaaccacttgttcat-----tttccttcttcatttcccttaatcattttaccatctttttca |
33169315 |
T |
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