View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_low_12 (Length: 316)
Name: NF14704_low_12
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 40946079 - 40946361
Alignment:
| Q |
15 |
cacagaaacatagagacatattgtgtgtttattaatcttaaattactacattttatttttgtttggttaatgtgagtgaagtttgttatggtaacaagcg |
114 |
Q |
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| T |
40946079 |
cacagaaacatagagacatattgtgtgtttattaatcttaaattactacattttgtttttgtttggttaatgtgagtaaagtttgttatggtaacaagcg |
40946178 |
T |
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| Q |
115 |
aagttaaatgcggtttaaatggatgccttgttgacaattagtgtatatcactagaggatgtaatatccatgatttgcattgatttatttataatgatttt |
214 |
Q |
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| T |
40946179 |
aagttaaatgcggtttaaatggatgccttgttgacaattagtgtatatcactagaggatgtaatatccatgatttgcattgatttatttataatgatttt |
40946278 |
T |
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| Q |
215 |
aacaattaaccatcattatatagttttttcacaaaagatatatcattctttagtttaaatattattcatcataataaaattct |
297 |
Q |
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| T |
40946279 |
aacaattaaccatcattatatagttttttcacaaaagatatatcattctttagtttaaatattattcatcataataaaattct |
40946361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 40949038 - 40949110
Alignment:
| Q |
213 |
ttaacaattaaccatcattatatagttttttcacaaaagatatatcattctttagtttaaatattattcatcata |
287 |
Q |
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| T |
40949038 |
ttaacaatcaacaatcgttatatagtttt--cataaaagatatatcattctttagtttaaatattattcatcata |
40949110 |
T |
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