View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_low_16 (Length: 282)
Name: NF14704_low_16
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 105 - 267
Target Start/End: Complemental strand, 1459209 - 1459047
Alignment:
| Q |
105 |
ccatgttaattaatgttcattataataataactttatatttttctcttaagagtttcatgtgctcatttatatgattctcttcctttaattgcagtgatc |
204 |
Q |
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| T |
1459209 |
ccatgttaattaatgttcattataataataactttatatttttctctcaagagtttcatgtgctcatttatatgattctcttcctttaattgtagtgatc |
1459110 |
T |
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| Q |
205 |
ttttgttgctatattttaaatgaccttgcttatagtttcattggatcttacttggttgctagt |
267 |
Q |
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| T |
1459109 |
ttttgttgctatattttaaatgaccttgcttatagtttcattggatcttacttggttgctagt |
1459047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 1470576 - 1470460
Alignment:
| Q |
105 |
ccatgttaattaatgttcattataataataactttatatttttctcttaagagtttcatgtgctcatttatatgattctcttcctt-taattgcagtgat |
203 |
Q |
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| T |
1470576 |
ccatgttaattaatggtcattgtaataataactttatatttttcttttaa-atttttatgtgctcacttttatgattctcttccttcaaaatctagtgat |
1470478 |
T |
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| Q |
204 |
cttttgttgctatatttt |
221 |
Q |
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| T |
1470477 |
catttgttgctatatttt |
1470460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 370452 - 370397
Alignment:
| Q |
127 |
taataataactttatatttttctcttaagagtttcatgtgctcatttatatgattc |
182 |
Q |
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| T |
370452 |
taataataactttagaaatttctcttaagagtttcatgtgctcatttttctgattc |
370397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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