View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14704_low_19 (Length: 253)
Name: NF14704_low_19
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_19 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 3040208 - 3039972
Alignment:
| Q |
18 |
tctctccgtctcatactacatcttttaagattttgcataattttttagagaaatttgttgagcatactaatttttatgataaaattaaatttagagacta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3040208 |
tctctccgtctcatactacatcttttaaggttttgcataattttttagagaaatttgtttagcatactaatttttatgataaaattaaatttagagacta |
3040109 |
T |
|
| Q |
118 |
aaacacctctaatactaaaatagttagtgaaatagttaaatgaattaagatccaataaataagagaattgatggaaaaaggt-aaatactaaagtgcatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
3040108 |
aaacacctctaatactaaaatagttagtgaaatagttaaatgaattgagatccaataaataagataattgatggaaaaaggtaaaatactaaagtgcatc |
3040009 |
T |
|
| Q |
217 |
taatatgaatttttaaaaacggttctaatggagcccc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3040008 |
caatatgaatttttaaaaacggttctaatggagcccc |
3039972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University