View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14704_low_2 (Length: 536)
Name: NF14704_low_2
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_2 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 133 - 536
Target Start/End: Original strand, 32194057 - 32194466
Alignment:
| Q |
133 |
aattaatatatgagatatactacatttttagaattatctaccc-agatacgatttctgttcttactatattatccgtatgaagttttttctgtctgttgt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
32194057 |
aattaatatatgagatatactacatttttataatattataccccagatacgatttttgttcttactatattattagtatgaagttttttctgtcagttgt |
32194156 |
T |
|
| Q |
232 |
ttaatgatgattaacctttatcgaagatctgtatgagatataaggtgagtttttctctttcaaccagattttgttcatacccaaaaatcataaatcgaac |
331 |
Q |
| |
|
|||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
32194157 |
ttaatgatgactaacctttatcgaagatcaatgtgagatataaggtgagtttttctcttccaaccagattttgttcatacccaaaaatcaaaaatcaaac |
32194256 |
T |
|
| Q |
332 |
atttgattatctacttaaagaatctaaatctcttctcatttgaatcaatgaattcttgcggatttttgtttgttttaggtaatagaagaaaaggaccaag |
431 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32194257 |
atttaattatctacttaaagaatctaaatctcttctcacttgaatcaatcaactcttgcggatttttgtttgttttaagtaatagaagaaaaggaccaag |
32194356 |
T |
|
| Q |
432 |
attttgtcaaaagaccaagatatagttttaattttccaagcca-----ccccgattgtcatctttttcaatacaatgcataaacgcctttggctagattc |
526 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32194357 |
attttgtcaaaagaccaagatatagttttaattttccaagccaaggggtccagattgtcatctttttcaatacaatgcataaacgcctttggctagattc |
32194456 |
T |
|
| Q |
527 |
atattcgtcc |
536 |
Q |
| |
|
|||||||||| |
|
|
| T |
32194457 |
atattcgtcc |
32194466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 32193406 - 32193469
Alignment:
| Q |
4 |
tccgtacaatatgcagcatgtg----tgtgtgatcctactcctaccagagtaccaggttccatc |
63 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32193406 |
tccgtacaatatgcagcatgtgtgtgtgtgtgatcctactcctaccagagtaccaggttccatc |
32193469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University