View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_low_22 (Length: 241)
Name: NF14704_low_22
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 49126588 - 49126806
Alignment:
| Q |
18 |
aattacagatgacttttttccttatcaatttgtctgtctgtctttagattgctcttcttaacatttgaacatttctcaggttgatcgaattttgtattct |
117 |
Q |
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| T |
49126588 |
aattacagatgacttttttccttatcaatttgtctgtctgtctttagattgctcttcttaacatttgaacatttctcaggttgatcgaattttgtattct |
49126687 |
T |
|
| Q |
118 |
tcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtcctggttctcatgcaggtaaacaattatc |
217 |
Q |
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| T |
49126688 |
tcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtcctggttctcatgcaggtaaacaattatc |
49126787 |
T |
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| Q |
218 |
atctcaaattcatattcat |
236 |
Q |
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||||||||||||||||||| |
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| T |
49126788 |
atctcaaattcatattcat |
49126806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 8800263 - 8800148
Alignment:
| Q |
93 |
tcaggttgatcgaattttgtattcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtcctg |
192 |
Q |
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|||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| | |||||| || |
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| T |
8800263 |
tcaggttgatcggattctgtattcgtcagttgtttatcctcataactatggttttatccctcgaactctatgtgaagacaatgatccactcgatgtcttg |
8800164 |
T |
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| Q |
193 |
gttctcatgcaggtaa |
208 |
Q |
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| T |
8800163 |
gttctcatgcaggtaa |
8800148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 32814803 - 32814690
Alignment:
| Q |
95 |
aggttgatcgaattttgtattcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtcctggt |
194 |
Q |
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|||||||||| ||| | || || |||||||| ||||| ||||||||||||||||| || | || || |||||||| | ||||| | |||||||| || |
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| T |
32814803 |
aggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagt |
32814704 |
T |
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| Q |
195 |
tctcatgcaggtaa |
208 |
Q |
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||| |||||||||| |
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| T |
32814703 |
tctgatgcaggtaa |
32814690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 7986425 - 7986537
Alignment:
| Q |
95 |
aggttgatcgaattttgtattcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtcctggt |
194 |
Q |
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|||||||||| ||| | || || || ||||| || || || ||||| ||||||||||| || || | |||||||||| |||||| || ||||| ||||| |
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| T |
7986425 |
aggttgatcgtattctttactcatcggttgtctacccacacaactacggttttatcccacgaaccatttgtgaagacagtgatcctatggatgttctggt |
7986524 |
T |
|
| Q |
195 |
tctcatgcaggta |
207 |
Q |
| |
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||| ||||||||| |
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| T |
7986525 |
tctgatgcaggta |
7986537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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