View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_low_27 (Length: 216)
Name: NF14704_low_27
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 40002670 - 40002556
Alignment:
| Q |
69 |
tctaacttactttttgttacaataatttgtaaggtacatttttgtcaccctcctcaacatgacaagtcccacctcttcctaaaataatctctaacatttt |
168 |
Q |
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| T |
40002670 |
tctaacttactttttgtgacaataatttgtaaggtacatttttgtcaccctcctcaacatgacaagtcccacctcttcctaaaatcatctctaagacttt |
40002571 |
T |
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| Q |
169 |
gtttgcgagtttgaa |
183 |
Q |
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| T |
40002570 |
gtttgcgagtttgaa |
40002556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 40002871 - 40002826
Alignment:
| Q |
18 |
ttgtttaaatccaataatatcaagttagtttccaaacaagcatgtact |
65 |
Q |
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| T |
40002871 |
ttgtttaaatccaataat--caagttagtttccaaacaagcatctact |
40002826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 40002706 - 40002676
Alignment:
| Q |
69 |
tctaacttactttttgttacaataatttgta |
99 |
Q |
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| T |
40002706 |
tctaacttactttttgttacaataatttgta |
40002676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 40002743 - 40002710
Alignment:
| Q |
79 |
tttttgttacaataatttgtaaggtacatttttg |
112 |
Q |
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| T |
40002743 |
tttttgttacaataattagtaaggtacatttttg |
40002710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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